Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C6Y28_RS07050 Genome accession   NZ_CP027569
Coordinates   1492514..1493596 (+) Length   360 a.a.
NCBI ID   WP_173364613.1    Uniprot ID   -
Organism   Megasphaera elsdenii strain NCIMB702410     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1487514..1498596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y28_RS07035 (C6Y28_07035) - 1488845..1489888 (+) 1044 WP_027894927.1 ABC transporter substrate-binding protein -
  C6Y28_RS07040 (C6Y28_07040) rimO 1489895..1491229 (+) 1335 WP_022498202.1 30S ribosomal protein S12 methylthiotransferase RimO -
  C6Y28_RS07045 (C6Y28_07045) - 1491245..1492504 (+) 1260 WP_027894926.1 competence/damage-inducible protein A -
  C6Y28_RS07050 (C6Y28_07050) recA 1492514..1493596 (+) 1083 WP_173364613.1 recombinase RecA Machinery gene
  C6Y28_RS07055 (C6Y28_07055) - 1493597..1494040 (+) 444 WP_022498200.1 regulatory protein RecX -
  C6Y28_RS07060 (C6Y28_07060) rny 1494242..1495777 (+) 1536 WP_014015895.1 ribonuclease Y -
  C6Y28_RS07090 (C6Y28_07090) - 1496525..1497244 (+) 720 WP_027894925.1 segregation and condensation protein A -
  C6Y28_RS07095 (C6Y28_07095) scpB 1497219..1497797 (+) 579 WP_027894924.1 SMC-Scp complex subunit ScpB -
  C6Y28_RS07100 (C6Y28_07100) - 1497766..1498485 (+) 720 WP_027894923.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38816.33 Da        Isoelectric Point: 4.8781

>NTDB_id=278198 C6Y28_RS07050 WP_173364613.1 1492514..1493596(+) (recA) [Megasphaera elsdenii strain NCIMB702410]
MKLDAKQTALENAMRKIEKDFGKGAIMRLGDIADKMNLEVISSGSLAVDLAVGVGGYPRGRVIEIYGPESSGKTTLALHA
IASAQKSGGIAAFIDAEHALDPVYARHLGVDTNELLISQPDNGEQALEITEELVRSGAVDIIVVDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGIISKSKAIVIFINQLREKVGVMFGNPETTTGGRALKFYASIRMEIRKGEAIKSGGDVIG
NRARVKVVKNKVAPPFKHCEFDIMYGTGISREGTVLDLGTSMDIIEKSGTWYSYKGERLGQGKENVKIFMKEHPEITDEV
EKIIRDTLAAEPEKFDEAMEEEDTAALETPDTPAAGSDEA

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=278198 C6Y28_RS07050 WP_173364613.1 1492514..1493596(+) (recA) [Megasphaera elsdenii strain NCIMB702410]
ATGAAGTTGGACGCAAAACAGACAGCACTTGAAAATGCAATGCGCAAGATTGAAAAGGATTTTGGCAAAGGTGCCATCAT
GCGCCTGGGAGACATTGCCGACAAGATGAACCTGGAAGTCATCTCTTCCGGTTCCCTGGCCGTCGACCTGGCCGTCGGCG
TCGGCGGCTATCCCCGGGGCCGCGTCATCGAAATCTACGGCCCTGAATCATCAGGCAAGACGACCCTGGCCCTGCATGCC
ATCGCTTCGGCCCAGAAGAGCGGCGGCATTGCCGCTTTCATCGATGCCGAACACGCCCTGGATCCGGTCTATGCCCGCCA
CCTCGGCGTCGACACGAATGAACTGCTCATTTCCCAGCCGGATAATGGCGAACAAGCCCTGGAAATCACGGAAGAACTCG
TCCGCAGCGGCGCTGTCGACATCATCGTCGTCGACTCCGTAGCCGCCCTGGTCCCGAAAGCGGAAATCGAAGGGGAAATG
GGCGATTCCCATGTTGGCCTCCAGGCCCGTCTCATGAGTCAGGCCCTGCGCAAACTGACAGGCATCATTTCCAAGTCCAA
GGCCATTGTCATCTTCATCAACCAGCTGCGTGAAAAAGTCGGCGTCATGTTCGGCAATCCCGAAACGACGACAGGCGGCC
GGGCCCTGAAGTTCTACGCGTCGATCCGCATGGAAATCCGCAAGGGCGAAGCCATCAAATCCGGTGGCGACGTCATCGGC
AACCGGGCGCGGGTCAAAGTCGTCAAGAATAAAGTGGCACCGCCTTTCAAACACTGCGAATTCGACATCATGTACGGCAC
GGGGATTTCCCGCGAAGGCACCGTCCTCGACCTGGGCACGTCCATGGATATCATCGAAAAGAGCGGCACCTGGTATTCTT
ATAAAGGCGAACGCCTGGGCCAGGGCAAGGAAAACGTCAAGATTTTCATGAAGGAACATCCTGAAATCACAGACGAAGTC
GAAAAGATCATCCGCGATACGCTGGCAGCGGAACCGGAAAAATTCGACGAAGCCATGGAAGAAGAGGATACGGCAGCACT
GGAAACGCCGGATACGCCGGCAGCCGGCAGCGACGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.782

89.167

0.622
  recA Latilactobacillus sakei subsp. sakei 23K

66.769

90.278

0.603
  recA Neisseria gonorrhoeae MS11

66.46

89.444

0.594
  recA Neisseria gonorrhoeae MS11

66.46

89.444

0.594
  recA Neisseria gonorrhoeae strain FA1090

66.46

89.444

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.264

92.5

0.594
  recA Glaesserella parasuis strain SC1401

64.438

91.389

0.589
  recA Streptococcus pneumoniae D39

65.432

90

0.589
  recA Streptococcus pneumoniae R6

65.432

90

0.589
  recA Streptococcus pneumoniae TIGR4

65.432

90

0.589
  recA Streptococcus pneumoniae Rx1

65.432

90

0.589
  recA Streptococcus mitis NCTC 12261

64.506

90

0.581
  recA Streptococcus pyogenes NZ131

64.11

90.556

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.03

91.667

0.578
  recA Streptococcus mitis SK321

63.889

90

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.614

91.389

0.572
  recA Pseudomonas stutzeri DSM 10701

63.777

89.722

0.572
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.777

89.722

0.572
  recA Vibrio cholerae strain A1552

63.777

89.722

0.572
  recA Acinetobacter baylyi ADP1

59.593

95.556

0.569
  recA Streptococcus mutans UA159

62.883

90.556

0.569
  recA Ralstonia pseudosolanacearum GMI1000

64.557

87.778

0.567
  recA Helicobacter pylori strain NCTC11637

59.706

94.444

0.564
  recA Acinetobacter baumannii D1279779

62.539

89.722

0.561
  recA Helicobacter pylori 26695

59.412

94.444

0.561
  recA Lactococcus lactis subsp. cremoris KW2

62.037

90

0.558

Multiple sequence alignment