Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MSR1_RS16745 Genome accession   NZ_CP027526
Coordinates   3574902..3575978 (-) Length   358 a.a.
NCBI ID   WP_024081150.1    Uniprot ID   V6F477
Organism   Magnetospirillum gryphiswaldense MSR-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3569902..3580978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSR1_RS16735 (MSR1_33810) - 3570607..3571860 (+) 1254 WP_158699551.1 sensor histidine kinase -
  MSR1_RS16740 (MSR1_33820) secA 3571993..3574713 (+) 2721 WP_106003245.1 preprotein translocase subunit SecA -
  MSR1_RS16745 (MSR1_33830) recA 3574902..3575978 (-) 1077 WP_024081150.1 recombinase RecA Machinery gene
  MSR1_RS16750 (MSR1_33840) - 3576100..3578490 (-) 2391 WP_234016257.1 PAS domain-containing sensor histidine kinase -
  MSR1_RS16755 (MSR1_33850) flhB 3578480..3579553 (-) 1074 WP_106003246.1 flagellar biosynthesis protein FlhB -
  MSR1_RS16760 (MSR1_33860) fliR 3579557..3580321 (-) 765 WP_106003247.1 flagellar biosynthetic protein FliR -
  MSR1_RS16765 (MSR1_33870) fliQ 3580358..3580627 (-) 270 WP_106003248.1 flagellar biosynthesis protein FliQ -
  MSR1_RS16770 (MSR1_33880) - 3580658..3580975 (-) 318 WP_106003249.1 flagellar hook-basal body complex protein FliE -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38093.63 Da        Isoelectric Point: 5.8260

>NTDB_id=277695 MSR1_RS16745 WP_024081150.1 3574902..3575978(-) (recA) [Magnetospirillum gryphiswaldense MSR-1]
MSQAALRLVDKDTMDRQKALEAAVSQIERAFGKGSIMKMGQKETVETEVVSTGSLGLDIALGIGGLPRGRIIEIYGPESS
GKTTLALHVLAEAQKKGGTCAFIDAEHALDPSYARKLGVNLDDLLISQPDAGEQALEICDTLVRSGAVDVLVVDSVAALV
PRAELEGEMGDSHVGLHARLMSQALRKLTGSVSKSKTIVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMEIRRVGA
IKDRDEVVGNQTRVKVVKNKLAPPFKVVDFDIMYGEGISKTGELIDLGVKANVVEKSGAWFSYNSTRVGQGRENAKQFLR
DNPAMAGEIEATIRANAGLVAEALAAGPGDLDGNAAED

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=277695 MSR1_RS16745 WP_024081150.1 3574902..3575978(-) (recA) [Magnetospirillum gryphiswaldense MSR-1]
ATGTCTCAGGCTGCGTTGCGTCTCGTGGATAAGGACACCATGGATCGTCAGAAGGCACTGGAAGCCGCCGTCAGCCAGAT
TGAGCGGGCGTTCGGCAAGGGCTCCATCATGAAGATGGGGCAAAAGGAAACGGTCGAGACCGAGGTGGTTTCCACCGGCT
CGCTGGGTTTGGACATCGCTTTGGGCATCGGCGGCTTGCCGCGCGGTCGCATCATCGAGATTTACGGACCGGAAAGCTCG
GGCAAGACCACCTTGGCCCTGCACGTTCTGGCCGAGGCGCAGAAAAAGGGCGGCACCTGCGCCTTCATCGATGCCGAACA
TGCCCTTGACCCGTCCTATGCCCGCAAGCTGGGGGTCAACCTGGATGATCTGCTGATCAGCCAGCCCGACGCCGGCGAAC
AGGCCTTGGAAATCTGCGATACCCTGGTGCGATCCGGCGCCGTCGACGTGCTGGTGGTCGATTCGGTCGCCGCCTTGGTG
CCGCGTGCCGAACTTGAAGGCGAGATGGGCGATTCCCACGTCGGTCTGCACGCCCGCCTGATGAGCCAGGCCTTGCGCAA
GCTGACCGGTTCGGTGTCCAAATCCAAGACCATCGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCG
GCAACCCGGAAACCACCACTGGCGGCAACGCGCTGAAGTTCTATGCCTCGGTGCGCATGGAAATCCGCCGTGTCGGCGCC
ATCAAGGACCGCGACGAGGTGGTGGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTGGCGCCGCCCTTTAAGGT
GGTTGATTTCGACATCATGTATGGCGAGGGCATTTCCAAGACCGGCGAATTGATCGATCTGGGCGTCAAGGCCAACGTGG
TGGAAAAGTCGGGCGCCTGGTTCTCGTACAACTCGACCCGTGTCGGTCAGGGCCGCGAGAACGCCAAGCAATTCCTGCGT
GACAACCCGGCCATGGCTGGCGAGATCGAAGCCACCATCCGCGCCAATGCCGGTCTGGTGGCCGAAGCCCTGGCCGCCGG
CCCCGGTGACCTGGACGGCAACGCCGCCGAGGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V6F477

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

67.552

94.693

0.64
  recA Neisseria gonorrhoeae MS11

65.797

96.369

0.634
  recA Neisseria gonorrhoeae MS11

65.797

96.369

0.634
  recA Neisseria gonorrhoeae strain FA1090

65.797

96.369

0.634
  recA Ralstonia pseudosolanacearum GMI1000

72.204

87.43

0.631
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.568

94.413

0.628
  recA Vibrio cholerae strain A1552

66.568

94.413

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

68

90.782

0.617
  recA Pseudomonas stutzeri DSM 10701

68.847

89.665

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.529

94.972

0.603
  recA Acinetobacter baumannii D1279779

66.875

89.385

0.598
  recA Acinetobacter baylyi ADP1

66.875

89.385

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

65.846

90.782

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.138

91.341

0.595
  recA Helicobacter pylori strain NCTC11637

63.385

90.782

0.575
  recA Streptococcus mitis NCTC 12261

62.424

92.179

0.575
  recA Streptococcus mitis SK321

62.424

92.179

0.575
  recA Helicobacter pylori 26695

63.077

90.782

0.573
  recA Streptococcus pneumoniae R6

62.121

92.179

0.573
  recA Streptococcus pneumoniae TIGR4

62.121

92.179

0.573
  recA Streptococcus pneumoniae Rx1

62.121

92.179

0.573
  recA Streptococcus pneumoniae D39

62.121

92.179

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.398

91.899

0.564
  recA Streptococcus pyogenes NZ131

61.585

91.62

0.564
  recA Streptococcus mutans UA159

60.241

92.737

0.559
  recA Lactococcus lactis subsp. cremoris KW2

59.394

92.179

0.547

Multiple sequence alignment