Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DRED_RS10245 Genome accession   NC_009253
Coordinates   2108950..2109993 (-) Length   347 a.a.
NCBI ID   WP_011878252.1    Uniprot ID   A4J5T8
Organism   Desulforamulus reducens MI-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2103950..2114993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRED_RS10220 (Dred_1915) - 2104173..2105117 (-) 945 WP_238442497.1 dipeptidase -
  DRED_RS10225 (Dred_1916) - 2105228..2105488 (-) 261 WP_011878248.1 stage V sporulation protein S -
  DRED_RS10230 (Dred_1917) - 2105617..2106396 (-) 780 WP_011878249.1 TIGR00282 family metallophosphoesterase -
  DRED_RS10235 (Dred_1918) - 2106414..2106932 (-) 519 WP_011878250.1 hypothetical protein -
  DRED_RS10240 (Dred_1919) rny 2107082..2108620 (-) 1539 WP_011878251.1 ribonuclease Y -
  DRED_RS10245 (Dred_1920) recA 2108950..2109993 (-) 1044 WP_011878252.1 recombinase RecA Machinery gene
  DRED_RS10250 (Dred_1921) - 2110164..2111762 (-) 1599 WP_011878253.1 DEAD/DEAH box helicase -
  DRED_RS10255 (Dred_1922) - 2111791..2113035 (-) 1245 WP_041274576.1 competence/damage-inducible protein A -
  DRED_RS10260 (Dred_1923) - 2113164..2114648 (-) 1485 WP_011878255.1 AAA family ATPase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37513.94 Da        Isoelectric Point: 5.3546

>NTDB_id=27761 DRED_RS10245 WP_011878252.1 2108950..2109993(-) (recA) [Desulforamulus reducens MI-1]
MSDKIKALEIALANIEKQFGKGSIMKLGDSTKLNIEAISSGALSLDIALGVGGLPRGRVVEIYGPESSGKTTVALHVIAE
AQKQNGMAAFIDAEHALDPVYARNLGVDTENLLVSQPDTGEQALEICEALVRSGAVDVVVVDSVAALVPRAEIEGDMGDT
HVGLQARLMSQALRKLTGIVSKSKTIVVFINQIREKVGVIYGSPEVTTGGRALKFYASVRMEVRKQENIKQGTDIVGSRT
RVKIVKNKVAPPFKQAEFDIMYGTGISKEGSILDVATELKIVNKSGAWYSYGDERLGQGRENAKELFKERPELCQEIQNK
VREKLSLSDSLPSVEGIPTDQSEEDLF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=27761 DRED_RS10245 WP_011878252.1 2108950..2109993(-) (recA) [Desulforamulus reducens MI-1]
ATGTCCGATAAAATAAAAGCCCTTGAAATAGCTCTGGCAAACATTGAAAAACAATTTGGTAAAGGCTCTATCATGAAATT
AGGGGATTCAACCAAATTAAATATAGAAGCTATATCTAGTGGAGCGTTATCATTGGATATCGCTCTGGGGGTAGGTGGAC
TACCCAGAGGCCGTGTAGTAGAAATTTATGGCCCAGAGTCATCTGGTAAAACCACAGTGGCCCTTCATGTAATCGCAGAG
GCCCAAAAACAAAACGGCATGGCAGCTTTTATTGATGCTGAACATGCCTTGGATCCGGTATATGCACGTAATTTGGGGGT
TGATACGGAAAACTTACTGGTTTCCCAACCGGATACAGGTGAACAGGCATTGGAGATATGCGAAGCGTTGGTGCGCAGTG
GCGCTGTGGATGTTGTGGTTGTAGACTCTGTGGCGGCCTTAGTTCCTCGGGCGGAAATTGAAGGGGACATGGGAGATACC
CATGTAGGGCTTCAAGCAAGGTTAATGTCTCAGGCTTTAAGGAAATTGACTGGTATAGTAAGTAAATCAAAAACCATCGT
TGTCTTTATTAACCAAATTCGTGAAAAGGTTGGCGTAATTTATGGATCGCCAGAGGTAACCACTGGCGGTCGGGCCTTAA
AGTTTTATGCTTCTGTTCGAATGGAGGTTCGTAAACAAGAAAACATTAAGCAGGGTACAGATATTGTAGGTAGCCGCACT
CGGGTGAAAATTGTTAAGAATAAAGTGGCACCTCCGTTTAAACAGGCAGAATTTGATATTATGTATGGTACAGGAATATC
CAAGGAAGGTAGTATCCTAGATGTTGCCACCGAATTGAAAATTGTAAATAAGAGCGGGGCTTGGTATTCCTACGGAGATG
AAAGATTAGGTCAGGGGCGCGAAAATGCAAAAGAGTTGTTTAAAGAACGCCCAGAATTATGTCAGGAGATTCAAAATAAG
GTTCGAGAAAAGTTATCCCTTAGCGATTCTCTCCCCTCCGTAGAGGGGATACCCACAGATCAATCAGAGGAAGATCTATT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4J5T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.909

95.101

0.674
  recA Latilactobacillus sakei subsp. sakei 23K

64.841

100

0.648
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

94.813

0.617
  recA Neisseria gonorrhoeae MS11

66.044

92.507

0.611
  recA Neisseria gonorrhoeae strain FA1090

66.044

92.507

0.611
  recA Neisseria gonorrhoeae MS11

66.044

92.507

0.611
  recA Helicobacter pylori strain NCTC11637

61.696

98.559

0.608
  recA Helicobacter pylori 26695

61.404

98.559

0.605
  recA Streptococcus pneumoniae D39

63.253

95.677

0.605
  recA Streptococcus pneumoniae Rx1

63.253

95.677

0.605
  recA Streptococcus pneumoniae R6

63.253

95.677

0.605
  recA Streptococcus pneumoniae TIGR4

63.253

95.677

0.605
  recA Glaesserella parasuis strain SC1401

64.706

93.084

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.933

98.847

0.602
  recA Streptococcus mitis SK321

61.834

97.406

0.602
  recA Streptococcus mitis NCTC 12261

62.651

95.677

0.599
  recA Ralstonia pseudosolanacearum GMI1000

66.242

90.49

0.599
  recA Acinetobacter baumannii D1279779

60

99.424

0.597
  recA Pseudomonas stutzeri DSM 10701

59.884

99.135

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.062

92.219

0.591
  recA Vibrio cholerae strain A1552

62.848

93.084

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

93.084

0.585
  recA Streptococcus pyogenes NZ131

62.346

93.372

0.582
  recA Acinetobacter baylyi ADP1

62.229

93.084

0.579
  recA Streptococcus mutans UA159

61.35

93.948

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.241

95.677

0.576

Multiple sequence alignment