Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C6V80_RS01720 Genome accession   NZ_CP027432
Coordinates   313072..314133 (+) Length   353 a.a.
NCBI ID   WP_123352484.1    Uniprot ID   A0AAJ4UXX3
Organism   Caminibacter pacificus strain TB6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 308072..319133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6V80_RS01695 (C6V80_01690) - 308125..308991 (-) 867 WP_180937082.1 menaquinone biosynthesis family protein -
  C6V80_RS01700 (C6V80_01695) - 309164..310210 (+) 1047 WP_139932240.1 cache domain-containing protein -
  C6V80_RS10330 - 310300..310665 (+) 366 Protein_327 GGDEF domain-containing protein -
  C6V80_RS10335 (C6V80_01700) - 310648..311466 (+) 819 WP_338025533.1 EAL domain-containing protein -
  C6V80_RS01710 (C6V80_01705) - 311463..312788 (+) 1326 WP_123352486.1 DUF3373 family protein -
  C6V80_RS01715 (C6V80_01710) - 312791..313021 (+) 231 WP_123352485.1 hypothetical protein -
  C6V80_RS01720 (C6V80_01715) recA 313072..314133 (+) 1062 WP_123352484.1 recombinase RecA Machinery gene
  C6V80_RS01725 (C6V80_01720) eno 314134..315399 (+) 1266 WP_123352483.1 phosphopyruvate hydratase -
  C6V80_RS01730 (C6V80_01725) - 315438..315680 (+) 243 WP_123352482.1 septum formation initiator family protein -
  C6V80_RS01735 (C6V80_01730) - 315680..316252 (+) 573 WP_123352481.1 AMIN domain-containing protein -
  C6V80_RS01740 (C6V80_01735) - 316239..316739 (+) 501 WP_123352480.1 shikimate kinase -
  C6V80_RS01745 (C6V80_01740) - 316729..316923 (+) 195 WP_123352479.1 shikimate kinase -
  C6V80_RS01750 (C6V80_01745) - 316932..317528 (+) 597 WP_123352478.1 uracil-DNA glycosylase -
  C6V80_RS01755 (C6V80_01750) flhB 317525..318583 (+) 1059 WP_420836387.1 flagellar biosynthesis protein FlhB -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38340.07 Da        Isoelectric Point: 5.8455

>NTDB_id=277138 C6V80_RS01720 WP_123352484.1 313072..314133(+) (recA) [Caminibacter pacificus strain TB6]
MDEKKQKALELALKQVEKQFGKGSLVKLSEKEIEPIASIPTGSFGLDLALGIGGIPKGRITEIYGPESSGKTTLALSIIA
QAQKQGGIAAFIDAEHAFDPIYARNIGVDIDNLLVSQPDYGEQALEIVETLARSGAVDIIVIDSVAALTPKAEIEGNMGD
AQVGVQARLMSQALRKLTAAIHKMNTTVVFINQIRMKIGMMGYGSPETTTGGNALKFYSSVRLDVRRIATLKQGDKEVGN
RVKVKVVKNKVAPPFRIAEFDIMFGKGISREGELLDYGVKLDIIDKSGSWFSYGATRLGQGKENAKAYLKEHPELAQEIE
QKIKEALGVELSHMIDAIENNKDNEDELNLKGE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=277138 C6V80_RS01720 WP_123352484.1 313072..314133(+) (recA) [Caminibacter pacificus strain TB6]
ATGGACGAAAAAAAGCAAAAAGCACTCGAACTTGCTTTAAAACAGGTTGAAAAGCAGTTCGGTAAAGGTTCTTTGGTAAA
ATTAAGTGAAAAAGAGATAGAACCTATCGCTTCTATTCCTACCGGAAGTTTCGGGCTTGATTTGGCTCTTGGAATAGGCG
GTATTCCAAAAGGAAGAATTACTGAAATTTACGGGCCGGAGAGTAGTGGTAAAACGACTCTTGCGCTATCTATTATCGCA
CAGGCTCAAAAACAAGGCGGAATTGCTGCGTTTATAGACGCGGAACATGCTTTTGACCCTATTTATGCAAGAAATATCGG
TGTTGATATCGATAATCTTTTGGTTTCTCAGCCGGATTACGGAGAACAAGCTCTTGAGATTGTAGAGACGCTTGCAAGAA
GCGGTGCCGTTGATATTATCGTAATCGACTCGGTAGCGGCTTTAACTCCAAAAGCGGAAATCGAAGGAAATATGGGTGAT
GCGCAAGTAGGTGTGCAAGCAAGACTTATGAGCCAGGCTCTAAGAAAACTGACAGCCGCTATTCATAAAATGAATACGAC
GGTGGTATTTATCAACCAAATAAGAATGAAAATCGGAATGATGGGATACGGAAGCCCTGAAACTACTACGGGTGGTAACG
CTCTTAAATTCTATTCGTCTGTAAGACTTGATGTAAGAAGAATCGCAACTTTAAAACAAGGCGACAAAGAAGTAGGAAAC
AGAGTAAAAGTAAAAGTGGTCAAAAACAAAGTCGCACCTCCGTTTAGAATTGCTGAATTCGACATTATGTTCGGAAAAGG
AATCAGTAGAGAGGGCGAACTTTTAGATTACGGAGTAAAACTTGATATTATCGATAAAAGCGGTAGCTGGTTTAGTTATG
GCGCTACAAGACTCGGTCAAGGAAAAGAAAACGCGAAAGCTTATTTAAAAGAGCATCCTGAACTTGCTCAAGAGATAGAA
CAAAAAATAAAAGAAGCTTTGGGTGTGGAACTTTCTCATATGATAGACGCAATCGAAAACAACAAAGACAACGAAGACGA
ATTAAATTTAAAAGGAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

71.884

97.734

0.703
  recA Helicobacter pylori 26695

72.866

92.918

0.677
  recA Helicobacter pylori strain NCTC11637

72.561

92.918

0.674
  recA Glaesserella parasuis strain SC1401

64.162

98.017

0.629
  recA Neisseria gonorrhoeae MS11

63.689

98.3

0.626
  recA Neisseria gonorrhoeae MS11

63.689

98.3

0.626
  recA Neisseria gonorrhoeae strain FA1090

63.689

98.3

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

92.351

0.609
  recA Pseudomonas stutzeri DSM 10701

65.138

92.635

0.603
  recA Acinetobacter baylyi ADP1

60.857

99.15

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.554

94.051

0.598
  recA Acinetobacter baumannii D1279779

63.914

92.635

0.592
  recA Ralstonia pseudosolanacearum GMI1000

65.605

88.952

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.385

92.635

0.578
  recA Vibrio cholerae strain A1552

62.385

92.635

0.578
  recA Streptococcus pneumoniae D39

57.759

98.584

0.569
  recA Streptococcus pneumoniae TIGR4

57.759

98.584

0.569
  recA Streptococcus pneumoniae Rx1

57.759

98.584

0.569
  recA Streptococcus pneumoniae R6

57.759

98.584

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.468

92.635

0.569
  recA Streptococcus mitis NCTC 12261

57.184

98.584

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.043

92.351

0.564
  recA Streptococcus mitis SK321

57.02

98.867

0.564
  recA Lactococcus lactis subsp. cremoris KW2

59.394

93.484

0.555
  recA Streptococcus pyogenes NZ131

59.091

93.484

0.552
  recA Streptococcus mutans UA159

58.133

94.051

0.547

Multiple sequence alignment