Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | C6N67_RS03435 | Genome accession | NZ_CP027427 |
| Coordinates | 682719..683870 (-) | Length | 383 a.a. |
| NCBI ID | WP_063083095.1 | Uniprot ID | A0A9Q8JGX9 |
| Organism | Weissella cibaria strain BM2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 642173..691102 | 682719..683870 | within | 0 |
Gene organization within MGE regions
Location: 642173..691102
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N67_RS03245 (C6N67_03245) | - | 642325..643701 (-) | 1377 | WP_106443989.1 | KxYKxGKxW signal peptide domain-containing protein | - |
| C6N67_RS03250 (C6N67_03250) | - | 643805..646243 (-) | 2439 | WP_106443990.1 | CAP domain-containing protein | - |
| C6N67_RS03255 (C6N67_03255) | - | 646521..647165 (-) | 645 | WP_106443991.1 | hypothetical protein | - |
| C6N67_RS03260 (C6N67_03260) | - | 647322..648191 (-) | 870 | WP_106443992.1 | hypothetical protein | - |
| C6N67_RS03265 (C6N67_03265) | - | 648428..648622 (-) | 195 | WP_106443993.1 | hypothetical protein | - |
| C6N67_RS03270 (C6N67_03270) | - | 648612..650360 (-) | 1749 | WP_106443994.1 | L-type lectin-domain containing protein | - |
| C6N67_RS03275 (C6N67_03275) | - | 650378..651352 (-) | 975 | WP_106443995.1 | DUF916 domain-containing protein | - |
| C6N67_RS03280 (C6N67_03280) | - | 651352..652824 (-) | 1473 | WP_106443996.1 | helix-turn-helix domain-containing protein | - |
| C6N67_RS03285 (C6N67_03285) | - | 652931..653326 (-) | 396 | WP_106443997.1 | LPXTG cell wall anchor domain-containing protein | - |
| C6N67_RS03290 (C6N67_03290) | - | 653329..654375 (-) | 1047 | WP_106443998.1 | DUF916 and DUF3324 domain-containing protein | - |
| C6N67_RS03295 (C6N67_03295) | - | 654435..655163 (-) | 729 | WP_106443999.1 | WxL domain-containing protein | - |
| C6N67_RS03300 (C6N67_03300) | - | 655397..655798 (-) | 402 | WP_099087903.1 | hypothetical protein | - |
| C6N67_RS03305 (C6N67_03305) | - | 655810..656181 (-) | 372 | WP_194687380.1 | 6-carboxytetrahydropterin synthase | - |
| C6N67_RS03310 (C6N67_03310) | - | 656178..657692 (-) | 1515 | WP_106444000.1 | hypothetical protein | - |
| C6N67_RS03315 (C6N67_03315) | - | 657689..659056 (-) | 1368 | WP_106444001.1 | TIGR03111 family XrtG-associated glycosyltransferase | - |
| C6N67_RS03320 (C6N67_03320) | xrtG | 659056..659649 (-) | 594 | WP_242973118.1 | exosortase family protein XrtG | - |
| C6N67_RS03325 (C6N67_03325) | - | 659660..660286 (-) | 627 | WP_106444003.1 | Firmicu-CTERM sorting domain-containing protein | - |
| C6N67_RS03335 (C6N67_03335) | - | 660543..661454 (-) | 912 | WP_106444005.1 | GGDEF domain-containing protein | - |
| C6N67_RS03340 (C6N67_03340) | - | 661473..662189 (-) | 717 | WP_158701312.1 | EAL domain-containing protein | - |
| C6N67_RS03345 (C6N67_03345) | - | 662577..663371 (-) | 795 | WP_106443728.1 | IS3 family transposase | - |
| C6N67_RS03350 (C6N67_03350) | - | 663419..663679 (-) | 261 | WP_003610944.1 | transposase | - |
| C6N67_RS03355 (C6N67_03355) | - | 663867..664586 (-) | 720 | WP_043710065.1 | helix-turn-helix domain-containing protein | - |
| C6N67_RS12010 | - | 664913..665656 (-) | 744 | WP_242874158.1 | transposase | - |
| C6N67_RS12015 | - | 665714..665884 (-) | 171 | WP_223822989.1 | hypothetical protein | - |
| C6N67_RS12020 | - | 665927..666136 (-) | 210 | WP_010370545.1 | transposase | - |
| C6N67_RS12025 | - | 666197..666448 (-) | 252 | WP_010370542.1 | transposase | - |
| C6N67_RS03365 (C6N67_03365) | - | 666633..668111 (-) | 1479 | WP_106444007.1 | helix-turn-helix domain-containing protein | - |
| C6N67_RS11720 | - | 668409..668546 (-) | 138 | WP_010370536.1 | hypothetical protein | - |
| C6N67_RS03370 (C6N67_03370) | - | 668860..669378 (-) | 519 | WP_106444008.1 | hypothetical protein | - |
| C6N67_RS03375 (C6N67_03375) | - | 669505..670419 (-) | 915 | WP_106444009.1 | helix-turn-helix transcriptional regulator | - |
| C6N67_RS03380 (C6N67_03380) | - | 670630..671868 (+) | 1239 | WP_063083087.1 | aminopeptidase | - |
| C6N67_RS03385 (C6N67_03385) | - | 671928..673046 (-) | 1119 | WP_106444010.1 | CAP domain-containing protein | - |
| C6N67_RS03390 (C6N67_03390) | - | 673218..673541 (-) | 324 | WP_145463746.1 | DUF1828 domain-containing protein | - |
| C6N67_RS03395 (C6N67_03395) | - | 673700..674596 (-) | 897 | WP_106444012.1 | RluA family pseudouridine synthase | - |
| C6N67_RS03400 (C6N67_03400) | - | 674670..674870 (-) | 201 | WP_003610350.1 | cold-shock protein | - |
| C6N67_RS03405 (C6N67_03405) | - | 675122..675874 (-) | 753 | WP_106444013.1 | DUF4811 domain-containing protein | - |
| C6N67_RS03410 (C6N67_03410) | - | 675876..677429 (-) | 1554 | WP_106444014.1 | MDR family MFS transporter | - |
| C6N67_RS03415 (C6N67_03415) | - | 677644..678444 (-) | 801 | WP_063083092.1 | LysM domain-containing protein | - |
| C6N67_RS03420 (C6N67_03420) | coaA | 678820..679764 (-) | 945 | WP_063083093.1 | type I pantothenate kinase | - |
| C6N67_RS03425 (C6N67_03425) | helD | 679770..682052 (-) | 2283 | WP_106444015.1 | RNA polymerase recycling motor HelD | - |
| C6N67_RS03430 (C6N67_03430) | - | 682235..682489 (-) | 255 | WP_063083094.1 | hypothetical protein | - |
| C6N67_RS03435 (C6N67_03435) | recA | 682719..683870 (-) | 1152 | WP_063083095.1 | recombinase RecA | Machinery gene |
| C6N67_RS03440 (C6N67_03440) | - | 683955..684431 (-) | 477 | WP_063083096.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| C6N67_RS03445 (C6N67_03445) | pgsA | 684567..685151 (-) | 585 | WP_010370489.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| C6N67_RS03450 (C6N67_03450) | - | 685177..686088 (-) | 912 | WP_043711292.1 | helix-turn-helix domain-containing protein | - |
| C6N67_RS03455 (C6N67_03455) | - | 686145..687431 (-) | 1287 | WP_106444016.1 | pitrilysin family protein | - |
| C6N67_RS03460 (C6N67_03460) | - | 687424..688686 (-) | 1263 | WP_063083098.1 | pitrilysin family protein | - |
| C6N67_RS03465 (C6N67_03465) | - | 688822..689052 (-) | 231 | WP_063083099.1 | hypothetical protein | - |
| C6N67_RS03470 (C6N67_03470) | - | 689158..690660 (-) | 1503 | WP_063083100.1 | gluconate:H+ symporter | - |
Sequence
Protein
Download Length: 383 a.a. Molecular weight: 40952.30 Da Isoelectric Point: 4.7415
>NTDB_id=277086 C6N67_RS03435 WP_063083095.1 682719..683870(-) (recA) [Weissella cibaria strain BM2]
MASGKNINPNKKLEGKIADPKERQNALNEALKKIEKSFGKGSVMKLGDSQFTKVQSTSTGSLKLDVALGIGGYPKGRIIE
IYGPESSGKTTLALHAVAEAQRNGGIVAYIDAENAMDVEYAKALGVDVDELLLSQPDTGEQGLAIADALITSGAIDMVVV
DSVAALTPKAEIDGEIGDSTVGLQARMMSQALRKMSGAILKTGTTAIFINQLREKIGIMFGNPETTPGGRALKFYSSVRL
DVRRKGGIDATKADGDDIKSVGNLTRIKVVKNKVAAPFREVEVEILFGKGISKTGEMIDLAADKDIIVKSGSWFSYNGEK
IGQGKVNVIRWLEDPEHKAIYDDVYNQVREAYIGSHDGADGSADDNDTSADNVDDIELEIDEN
MASGKNINPNKKLEGKIADPKERQNALNEALKKIEKSFGKGSVMKLGDSQFTKVQSTSTGSLKLDVALGIGGYPKGRIIE
IYGPESSGKTTLALHAVAEAQRNGGIVAYIDAENAMDVEYAKALGVDVDELLLSQPDTGEQGLAIADALITSGAIDMVVV
DSVAALTPKAEIDGEIGDSTVGLQARMMSQALRKMSGAILKTGTTAIFINQLREKIGIMFGNPETTPGGRALKFYSSVRL
DVRRKGGIDATKADGDDIKSVGNLTRIKVVKNKVAAPFREVEVEILFGKGISKTGEMIDLAADKDIIVKSGSWFSYNGEK
IGQGKVNVIRWLEDPEHKAIYDDVYNQVREAYIGSHDGADGSADDNDTSADNVDDIELEIDEN
Nucleotide
Download Length: 1152 bp
>NTDB_id=277086 C6N67_RS03435 WP_063083095.1 682719..683870(-) (recA) [Weissella cibaria strain BM2]
ATGGCATCAGGAAAAAACATTAACCCAAATAAGAAGTTGGAAGGAAAGATTGCAGACCCTAAGGAACGTCAAAATGCATT
GAACGAAGCCTTAAAAAAGATTGAAAAGTCTTTTGGTAAGGGATCTGTAATGAAGCTAGGTGATAGCCAATTTACGAAGG
TGCAATCAACGTCAACTGGTTCATTGAAGTTGGACGTGGCCCTTGGTATTGGTGGCTACCCTAAGGGCCGTATTATTGAA
ATCTACGGACCTGAATCATCAGGTAAGACGACGTTGGCTTTGCACGCAGTTGCCGAGGCTCAACGCAACGGTGGCATTGT
CGCTTATATCGATGCCGAAAACGCGATGGACGTTGAGTACGCCAAGGCATTGGGTGTTGACGTCGATGAGTTGCTTTTGT
CACAACCAGATACTGGTGAACAAGGACTGGCAATTGCTGACGCCTTGATTACATCAGGTGCGATTGACATGGTTGTTGTC
GACTCTGTTGCAGCGTTGACACCAAAGGCAGAAATTGACGGTGAAATCGGTGATTCAACAGTTGGTTTGCAAGCACGTAT
GATGTCTCAAGCTTTGCGTAAGATGTCAGGTGCTATTTTGAAGACTGGTACAACAGCAATCTTCATTAACCAATTACGTG
AGAAGATTGGTATCATGTTTGGTAACCCAGAAACAACGCCTGGTGGACGTGCGTTGAAGTTCTACTCATCAGTGCGTTTG
GATGTCCGCCGTAAGGGTGGTATTGATGCGACGAAGGCTGATGGGGATGATATCAAGTCGGTTGGTAATTTGACACGTAT
TAAGGTTGTTAAGAACAAGGTTGCGGCGCCATTCCGTGAAGTGGAAGTTGAAATCTTGTTTGGTAAGGGAATTTCTAAGA
CTGGTGAAATGATTGACTTGGCGGCTGATAAAGATATTATCGTTAAGTCAGGGTCATGGTTCTCATATAATGGCGAGAAG
ATTGGTCAAGGAAAGGTCAATGTTATTCGTTGGTTGGAAGACCCAGAACACAAGGCTATTTACGATGATGTATATAACCA
AGTTCGTGAAGCCTACATTGGTAGCCATGATGGCGCCGATGGCTCAGCCGATGATAATGACACGTCAGCTGATAACGTGG
ATGATATTGAACTTGAAATTGATGAAAACTAA
ATGGCATCAGGAAAAAACATTAACCCAAATAAGAAGTTGGAAGGAAAGATTGCAGACCCTAAGGAACGTCAAAATGCATT
GAACGAAGCCTTAAAAAAGATTGAAAAGTCTTTTGGTAAGGGATCTGTAATGAAGCTAGGTGATAGCCAATTTACGAAGG
TGCAATCAACGTCAACTGGTTCATTGAAGTTGGACGTGGCCCTTGGTATTGGTGGCTACCCTAAGGGCCGTATTATTGAA
ATCTACGGACCTGAATCATCAGGTAAGACGACGTTGGCTTTGCACGCAGTTGCCGAGGCTCAACGCAACGGTGGCATTGT
CGCTTATATCGATGCCGAAAACGCGATGGACGTTGAGTACGCCAAGGCATTGGGTGTTGACGTCGATGAGTTGCTTTTGT
CACAACCAGATACTGGTGAACAAGGACTGGCAATTGCTGACGCCTTGATTACATCAGGTGCGATTGACATGGTTGTTGTC
GACTCTGTTGCAGCGTTGACACCAAAGGCAGAAATTGACGGTGAAATCGGTGATTCAACAGTTGGTTTGCAAGCACGTAT
GATGTCTCAAGCTTTGCGTAAGATGTCAGGTGCTATTTTGAAGACTGGTACAACAGCAATCTTCATTAACCAATTACGTG
AGAAGATTGGTATCATGTTTGGTAACCCAGAAACAACGCCTGGTGGACGTGCGTTGAAGTTCTACTCATCAGTGCGTTTG
GATGTCCGCCGTAAGGGTGGTATTGATGCGACGAAGGCTGATGGGGATGATATCAAGTCGGTTGGTAATTTGACACGTAT
TAAGGTTGTTAAGAACAAGGTTGCGGCGCCATTCCGTGAAGTGGAAGTTGAAATCTTGTTTGGTAAGGGAATTTCTAAGA
CTGGTGAAATGATTGACTTGGCGGCTGATAAAGATATTATCGTTAAGTCAGGGTCATGGTTCTCATATAATGGCGAGAAG
ATTGGTCAAGGAAAGGTCAATGTTATTCGTTGGTTGGAAGACCCAGAACACAAGGCTATTTACGATGATGTATATAACCA
AGTTCGTGAAGCCTACATTGGTAGCCATGATGGCGCCGATGGCTCAGCCGATGATAATGACACGTCAGCTGATAACGTGG
ATGATATTGAACTTGAAATTGATGAAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.