Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CEQ07_RS07300 Genome accession   NZ_CP027417
Coordinates   1535096..1536172 (-) Length   358 a.a.
NCBI ID   WP_018026155.1    Uniprot ID   A0A095Z9K8
Organism   Oligella urethralis strain FDAARGOS_329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1530096..1541172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ07_RS07280 (CEQ07_07285) - 1530636..1530974 (-) 339 WP_018026151.1 P-II family nitrogen regulator -
  CEQ07_RS07285 (CEQ07_07290) - 1531077..1532762 (-) 1686 WP_105885495.1 NAD+ synthase -
  CEQ07_RS07290 (CEQ07_07295) argH 1532910..1534331 (+) 1422 WP_105885496.1 argininosuccinate lyase -
  CEQ07_RS07295 (CEQ07_07300) recX 1534469..1535086 (-) 618 WP_018026154.1 recombination regulator RecX -
  CEQ07_RS07300 (CEQ07_07305) recA 1535096..1536172 (-) 1077 WP_018026155.1 recombinase RecA Machinery gene
  CEQ07_RS07305 (CEQ07_07310) - 1536350..1537252 (+) 903 WP_105885497.1 recombination-associated protein RdgC -
  CEQ07_RS07310 (CEQ07_07315) - 1537298..1538119 (-) 822 WP_018026157.1 class I SAM-dependent methyltransferase -
  CEQ07_RS07315 (CEQ07_07320) - 1538147..1538662 (-) 516 WP_018026158.1 DUF2478 domain-containing protein -
  CEQ07_RS07320 (CEQ07_07325) - 1538680..1539219 (-) 540 WP_018026159.1 hypothetical protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38722.19 Da        Isoelectric Point: 4.8857

>NTDB_id=277027 CEQ07_RS07300 WP_018026155.1 1535096..1536172(-) (recA) [Oligella urethralis strain FDAARGOS_329]
MSKKATSVANDERSKALAAALSQIEKQFGKGSVMRYGDNEVQHDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGK
TTLTLQVIAEMQKIGGTCAFIDAEHALDVQYAARLGINLEDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALTPR
AEIEGDMGDNLPGLQARLMSQALRKLTASIKRTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIK
RGDETIGNETRVKVVKNKVAPPFKQTEFDIMYGTGISREGEIIDLGVKAGIVDKAGAWYSYEGTRIGQGKDNVREYLREN
PAMAMEIENKIREDLGIIQRAMSTDPVEGADAESPEEI

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=277027 CEQ07_RS07300 WP_018026155.1 1535096..1536172(-) (recA) [Oligella urethralis strain FDAARGOS_329]
ATGAGTAAAAAAGCAACTAGTGTGGCTAATGACGAGCGTTCAAAAGCCTTGGCAGCAGCCTTATCCCAGATTGAAAAGCA
ATTTGGTAAGGGATCCGTGATGCGCTACGGGGATAATGAGGTCCAGCACGATATTCAGGTTGTGTCTACCGGTTCCTTAG
GCTTGGATATTGCTTTAGGTGTCGGCGGGCTGCCGCGTGGTCGTGTGATCGAGATCTATGGTCCGGAGTCATCAGGTAAG
ACCACCTTAACCTTACAGGTGATTGCTGAGATGCAAAAGATCGGCGGTACGTGTGCTTTTATTGATGCTGAGCATGCCTT
GGACGTGCAGTATGCGGCTCGCTTAGGGATTAATCTTGAGGATCTCTTGATTTCTCAGCCAGATACGGGTGAGCAGGCGC
TTGAGATTACTGATGCCTTAGTGCGTTCCGGTTCAGTGGATTTGATCGTGATTGACTCGGTTGCCGCTTTAACGCCACGT
GCTGAGATTGAGGGTGATATGGGTGATAATCTACCCGGTCTGCAGGCACGTTTGATGAGTCAAGCGCTACGCAAATTAAC
TGCCTCCATCAAGCGCACCAATTGCATGGTGATCTTTATTAATCAGATTCGTATGAAGATCGGTGTGATGTTCGGTAGTC
CTGAAACCACCACTGGGGGTAATGCACTGAAGTTCTATTCTTCGGTACGTCTGGATATCCGCCGCATTGGTTCAATTAAA
CGTGGTGACGAAACCATTGGTAATGAGACTCGTGTTAAGGTGGTCAAAAATAAAGTCGCCCCTCCGTTTAAGCAAACCGA
GTTTGATATTATGTACGGTACCGGCATTTCACGTGAGGGTGAGATTATTGACCTAGGAGTGAAAGCAGGGATTGTGGATA
AAGCCGGTGCCTGGTATAGCTATGAAGGCACCCGTATCGGCCAGGGTAAGGACAATGTGCGTGAGTATTTACGAGAAAAT
CCTGCCATGGCAATGGAGATTGAGAATAAGATCCGCGAGGACTTAGGCATTATCCAACGTGCCATGTCGACCGATCCGGT
TGAGGGTGCAGACGCCGAATCGCCTGAGGAAATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A095Z9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.896

93.575

0.757
  recA Glaesserella parasuis strain SC1401

66.667

99.721

0.665
  recA Acinetobacter baylyi ADP1

73.006

91.061

0.665
  recA Pseudomonas stutzeri DSM 10701

70.118

94.413

0.662
  recA Acinetobacter baumannii D1279779

72.699

91.061

0.662
  recA Neisseria gonorrhoeae MS11

68.103

97.207

0.662
  recA Neisseria gonorrhoeae MS11

68.103

97.207

0.662
  recA Neisseria gonorrhoeae strain FA1090

68.103

97.207

0.662
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.632

91.061

0.634
  recA Vibrio cholerae strain A1552

69.632

91.061

0.634
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.882

94.972

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.35

91.899

0.601
  recA Helicobacter pylori 26695

64.939

91.62

0.595
  recA Helicobacter pylori strain NCTC11637

64.634

91.62

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

63.804

91.061

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.721

94.134

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

92.179

0.575
  recA Streptococcus mutans UA159

57.835

98.045

0.567
  recA Streptococcus pyogenes NZ131

60.909

92.179

0.561
  recA Streptococcus pneumoniae R6

60.423

92.458

0.559
  recA Streptococcus pneumoniae Rx1

60.423

92.458

0.559
  recA Streptococcus pneumoniae D39

60.423

92.458

0.559
  recA Streptococcus pneumoniae TIGR4

60.423

92.458

0.559
  recA Streptococcus mitis NCTC 12261

60.121

92.458

0.556
  recA Streptococcus mitis SK321

60.121

92.458

0.556
  recA Lactococcus lactis subsp. cremoris KW2

57.704

92.458

0.534

Multiple sequence alignment