Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D7H65_RS17665 Genome accession   NZ_CP032569
Coordinates   3740536..3741045 (-) Length   169 a.a.
NCBI ID   WP_016487841.1    Uniprot ID   A0ABM9FB01
Organism   Pseudomonas aeruginosa strain BA7823     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3735536..3746045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7H65_RS17655 (D7H65_17675) - 3736793..3737620 (-) 828 WP_003092327.1 DUF932 domain-containing protein -
  D7H65_RS17660 (D7H65_17680) - 3738013..3740469 (+) 2457 WP_016487840.1 AAA family ATPase -
  D7H65_RS17665 (D7H65_17685) radC 3740536..3741045 (-) 510 WP_016487841.1 DNA repair protein RadC Machinery gene
  D7H65_RS17670 (D7H65_17690) - 3741397..3742460 (-) 1064 Protein_3413 YhcG family protein -
  D7H65_RS17675 (D7H65_17695) - 3742457..3743656 (-) 1200 WP_014603550.1 site-specific integrase -
  D7H65_RS17680 (D7H65_17700) - 3743878..3744486 (-) 609 WP_003104390.1 START domain-containing protein -
  D7H65_RS17685 (D7H65_17705) - 3744620..3744874 (-) 255 WP_003087397.1 YkgJ family cysteine cluster protein -
  D7H65_RS17690 (D7H65_17710) - 3744978..3745733 (-) 756 WP_033990463.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18781.39 Da        Isoelectric Point: 6.4951

>NTDB_id=276845 D7H65_RS17665 WP_016487841.1 3740536..3741045(-) (radC) [Pseudomonas aeruginosa strain BA7823]
MSQLSFPSFDSCLLVRDAHGRYLPASADDILEAARQVIDRKMQRGAEFTSPAAVKEYLRTKLASFEHEVFVVLFMDTRHR
LIEYREMFHGTIDGASVYPREVVKEALRLNAAAVVVSHNHPSGNPEPSAADRALTQRLKEALGLVDVRVLDHIIVAGNET
ASFAEHGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=276845 D7H65_RS17665 WP_016487841.1 3740536..3741045(-) (radC) [Pseudomonas aeruginosa strain BA7823]
ATGTCGCAACTGTCCTTTCCCTCGTTCGATTCCTGTCTGCTGGTGCGCGACGCGCACGGGCGCTATCTACCGGCATCGGC
CGACGACATTCTGGAAGCTGCGCGCCAGGTCATTGACCGGAAAATGCAGCGCGGAGCAGAGTTCACTTCGCCGGCGGCGG
TCAAGGAATACTTGCGTACAAAGTTGGCCAGCTTCGAGCATGAGGTGTTCGTAGTGCTGTTCATGGATACGCGCCATCGT
CTGATCGAATACAGGGAGATGTTCCACGGCACTATTGACGGTGCGTCGGTGTATCCGCGCGAAGTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCGGCGGTCGTCGTTTCGCACAACCATCCGAGCGGAAACCCCGAGCCGAGCGCGGCTGACCGGGCGC
TGACCCAGCGGCTCAAGGAAGCGTTGGGTCTGGTGGACGTGCGCGTGCTCGATCACATCATCGTTGCGGGCAACGAAACG
GCATCGTTCGCCGAGCATGGGCTGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45

82.84

0.373

Multiple sequence alignment