Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C6H90_RS00100 Genome accession   NZ_CP027212
Coordinates   25348..26412 (+) Length   354 a.a.
NCBI ID   WP_010229135.1    Uniprot ID   Q9PLS6
Organism   Chlamydia muridarum str. Nigg isolate CM006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 20348..31412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6H90_RS00075 (C6H90_00075) - 20968..21264 (-) 297 WP_010229112.1 YggT family protein -
  C6H90_RS00080 (C6H90_00080) - 21367..22746 (+) 1380 WP_010229114.1 hypothetical protein -
  C6H90_RS00085 (C6H90_00085) - 22747..23325 (+) 579 WP_010229116.1 hypothetical protein -
  C6H90_RS00090 (C6H90_00090) - 23316..24590 (+) 1275 WP_010229119.1 toxin-antitoxin system YwqK family antitoxin -
  C6H90_RS00095 (C6H90_00095) - 24593..25129 (+) 537 WP_010229124.1 5-formyltetrahydrofolate cyclo-ligase -
  C6H90_RS00100 (C6H90_00100) recA 25348..26412 (+) 1065 WP_010229135.1 recombinase RecA Machinery gene
  C6H90_RS00105 (C6H90_00105) - 26684..28513 (+) 1830 WP_010229138.1 DUF1347 family protein -
  C6H90_RS00110 (C6H90_00110) recD 28506..29999 (+) 1494 WP_010229142.1 exodeoxyribonuclease V subunit alpha -
  C6H90_RS00115 (C6H90_00115) - 30065..30244 (+) 180 WP_010229145.1 hypothetical protein -
  C6H90_RS00120 (C6H90_00120) lptB 30323..31042 (-) 720 WP_010229155.1 LPS export ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38070.62 Da        Isoelectric Point: 7.3267

>NTDB_id=275750 C6H90_RS00100 WP_010229135.1 25348..26412(+) (recA) [Chlamydia muridarum str. Nigg isolate CM006]
MSVPDRKRALEAAIAYIEKQFGAGSIMSLGKHSSAHEISTIKTGALSLDLALGIGGVPKGRIIEIFGPESSGKTTLATHI
VANAQKMGGVAAYIDAEHALDPNYAALIGANINDLMISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGEI
GDVHVGLQARMMSQALRKLTATLARTNTCAIFINQIREKIGVSFGNPETTTGGRALKFYSSIRMDIRRIGAIKGGENFDI
GNRIKVKVAKNKLAPPFRTAEFDILFNEGISSAGCIIDLAVEKNIIDKKGSWFNYQDRKLGQGREAVREELKRNKELFQE
LERRIYESVQASSSQALASACLDQEAREVAEAAK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=275750 C6H90_RS00100 WP_010229135.1 25348..26412(+) (recA) [Chlamydia muridarum str. Nigg isolate CM006]
ATGAGCGTTCCCGACAGAAAAAGGGCTTTGGAAGCTGCCATTGCTTACATCGAGAAGCAATTTGGCGCAGGATCTATCAT
GAGTTTAGGGAAGCATTCTTCTGCTCATGAGATATCAACTATTAAAACTGGCGCATTGTCGTTAGATTTAGCTCTGGGAA
TAGGAGGAGTTCCTAAAGGAAGAATTATAGAGATTTTTGGCCCAGAGTCTTCAGGGAAAACGACTCTAGCAACGCATATC
GTGGCTAATGCCCAAAAAATGGGGGGTGTGGCAGCTTATATTGATGCTGAGCACGCCTTAGATCCTAATTATGCTGCGCT
AATTGGTGCTAATATTAATGATTTAATGATCTCCCAGCCCGATTGTGGAGAGGATGCTTTGAGTATTGCAGAGCTTCTGG
CTCGATCGGGAGCTGTTGATGTCATCGTTATCGATTCGGTGGCAGCCTTGGTTCCAAAGAGCGAATTGGAAGGAGAAATT
GGAGATGTGCATGTGGGTTTACAAGCACGCATGATGTCTCAGGCTTTACGAAAATTAACGGCGACGTTGGCACGAACGAA
CACTTGTGCGATTTTTATTAACCAAATTCGAGAGAAGATAGGTGTTAGCTTCGGGAATCCTGAGACCACAACAGGGGGGC
GGGCACTTAAATTTTACTCTTCTATTCGTATGGATATTCGTCGTATCGGTGCTATCAAAGGAGGCGAAAACTTCGATATA
GGAAACCGAATTAAGGTGAAGGTCGCAAAAAATAAATTAGCTCCTCCATTTCGAACTGCTGAATTTGATATTTTGTTCAA
TGAAGGGATTTCTTCTGCGGGATGCATTATTGACCTTGCTGTAGAAAAAAACATTATTGATAAGAAAGGATCTTGGTTCA
ATTACCAAGATCGTAAGTTGGGTCAAGGCCGAGAGGCTGTGCGCGAAGAGCTGAAAAGGAATAAAGAGTTATTCCAAGAG
TTAGAGCGCCGTATTTATGAGTCTGTACAAGCTTCCTCATCACAGGCGCTAGCATCTGCTTGCTTGGACCAGGAGGCTCG
AGAAGTAGCAGAAGCAGCGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PLS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.391

97.458

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

60.991

91.243

0.556
  recA Helicobacter pylori strain NCTC11637

59.816

92.09

0.551
  recA Helicobacter pylori 26695

59.509

92.09

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.61

93.503

0.548
  recA Glaesserella parasuis strain SC1401

57.101

95.48

0.545
  recA Ralstonia pseudosolanacearum GMI1000

59.259

91.525

0.542
  recA Neisseria gonorrhoeae MS11

59.502

90.678

0.54
  recA Neisseria gonorrhoeae MS11

59.502

90.678

0.54
  recA Neisseria gonorrhoeae strain FA1090

59.502

90.678

0.54
  recA Pseudomonas stutzeri DSM 10701

57.015

94.633

0.54
  recA Acinetobacter baylyi ADP1

54.31

98.305

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.895

91.243

0.528
  recA Vibrio cholerae strain A1552

57.895

91.243

0.528
  recA Lactococcus lactis subsp. cremoris KW2

57.716

91.525

0.528
  recA Latilactobacillus sakei subsp. sakei 23K

57.538

91.808

0.528
  recA Streptococcus mitis SK321

57.407

91.525

0.525
  recA Streptococcus mitis NCTC 12261

57.407

91.525

0.525
  recA Streptococcus pyogenes NZ131

57.099

91.525

0.523
  recA Streptococcus mutans UA159

56.79

91.525

0.52
  recA Acinetobacter baumannii D1279779

55.455

93.22

0.517
  recA Streptococcus pneumoniae R6

56.481

91.525

0.517
  recA Streptococcus pneumoniae TIGR4

56.481

91.525

0.517
  recA Streptococcus pneumoniae D39

56.481

91.525

0.517
  recA Streptococcus pneumoniae Rx1

56.481

91.525

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.74

92.373

0.506

Multiple sequence alignment