Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C5E20_RS05540 Genome accession   NZ_CP026980
Coordinates   1153927..1155000 (+) Length   357 a.a.
NCBI ID   WP_012822822.1    Uniprot ID   A0A0H3I083
Organism   Pectobacterium parmentieri strain IFB5441     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1148927..1160000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5E20_RS05515 (C5E20_05525) - 1149253..1150851 (-) 1599 WP_121264431.1 sensor domain-containing diguanylate cyclase -
  C5E20_RS05520 (C5E20_05530) - 1151013..1151687 (-) 675 WP_005972142.1 MarC family NAAT transporter -
  C5E20_RS05525 (C5E20_05535) - 1151771..1152259 (-) 489 WP_121264434.1 SRPBCC family protein -
  C5E20_RS05530 (C5E20_05540) - 1152742..1153077 (+) 336 WP_005972147.1 hypothetical protein -
  C5E20_RS05535 (C5E20_05545) pncC 1153325..1153819 (+) 495 WP_121264436.1 nicotinamide-nucleotide amidase -
  C5E20_RS05540 (C5E20_05550) recA 1153927..1155000 (+) 1074 WP_012822822.1 recombinase RecA Machinery gene
  C5E20_RS05545 (C5E20_05555) recX 1155046..1155534 (+) 489 WP_012822823.1 recombination regulator RecX -
  C5E20_RS05550 (C5E20_05560) alaS 1155672..1158299 (+) 2628 WP_012822824.1 alanine--tRNA ligase -
  C5E20_RS05555 (C5E20_05565) csrA 1158623..1158808 (+) 186 WP_005972168.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38234.70 Da        Isoelectric Point: 5.0681

>NTDB_id=274163 C5E20_RS05540 WP_012822822.1 1153927..1155000(+) (recA) [Pectobacterium parmentieri strain IFB5441]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENSAIAAEL
DKKLREMLLHKGNELTPAAVGNSHDEDEFAGEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=274163 C5E20_RS05540 WP_012822822.1 1153927..1155000(+) (recA) [Pectobacterium parmentieri strain IFB5441]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGTCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCGATGGATGTTGAAACCATTTCTACGGGCTCTTTATCCCTTGATATTGCTCTGGGGG
CCGGCGGTTTACCTATGGGGCGCATCGTTGAGATTTATGGCCCAGAATCTTCTGGTAAAACCACGCTGACCTTACAGGTG
ATTGCCGCTGCTCAACGCGAAGGAAAAACCTGTGCGTTCATCGATGCTGAACATGCGTTGGACCCGATTTATGCGAAAAA
ACTTGGCGTAGATATTGATAACCTGCTGTGTTCTCAGCCGGATACCGGTGAGCAAGCACTGGAGATCTGTGATGCACTCA
CGCGCTCTGGCGCTGTTGACGTTATCATTGTCGACTCTGTTGCAGCCTTGACACCAAAAGCTGAAATTGAAGGCGAAATC
GGTGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCTATGCGTAAACTGGCTGGTAACCTGAAACAAGCCAA
TACGCTGCTAATCTTCATTAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCTGAAACCACTACCGGTGGTA
ATGCACTGAAATTTTATGCCTCTGTTCGTCTGGATATTCGTCGTACTGGCGCTATCAAGGACGGTGAAGAAGTTGTCGGT
AGCGAAACTCGCGTTAAAGTCGTGAAGAATAAAGTGGCAGCACCGTTCAAACAGGCTGAATTCCAAATTTTGTATGGTGA
AGGCATCAATATCCACGGTGAGTTAGTTGATCTGGGTGTGAAACACAAACTGATCGAAAAAGCGGGTGCATGGTATAGCT
ATAACGGCGACAAAATCGGCCAGGGTAAAGCAAACGCCTGCAATTTCCTGAAAGAGAATTCAGCGATTGCTGCTGAACTG
GATAAAAAATTGCGTGAAATGCTGCTGCACAAAGGCAATGAGCTAACGCCTGCCGCAGTAGGTAATAGCCATGACGAAGA
TGAATTCGCTGGTGAAGGCAACGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3I083

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.535

99.44

0.821
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.535

99.44

0.821
  recA Pseudomonas stutzeri DSM 10701

73.746

94.958

0.7
  recA Acinetobacter baylyi ADP1

70.231

96.919

0.681
  recA Glaesserella parasuis strain SC1401

68.946

98.319

0.678
  recA Acinetobacter baumannii D1279779

72.424

92.437

0.669
  recA Neisseria gonorrhoeae MS11

69.325

91.317

0.633
  recA Neisseria gonorrhoeae MS11

69.325

91.317

0.633
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.317

0.633
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.115

0.613
  recA Streptococcus pneumoniae TIGR4

60

99.44

0.597
  recA Streptococcus pneumoniae Rx1

60

99.44

0.597
  recA Streptococcus pneumoniae D39

60

99.44

0.597
  recA Streptococcus pneumoniae R6

60

99.44

0.597
  recA Helicobacter pylori strain NCTC11637

62.997

91.597

0.577
  recA Helicobacter pylori 26695

62.691

91.597

0.574
  recA Streptococcus mutans UA159

62.462

91.036

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.838

0.566
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

91.597

0.566
  recA Streptococcus mitis SK321

62.539

90.476

0.566
  recA Streptococcus mitis NCTC 12261

62.539

90.476

0.566
  recA Streptococcus pyogenes NZ131

61.846

91.036

0.563
  recA Lactococcus lactis subsp. cremoris KW2

61.92

90.476

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.036

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.282

91.317

0.532

Multiple sequence alignment