Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P9515_RS08345 Genome accession   NC_008817
Coordinates   1531998..1533110 (+) Length   370 a.a.
NCBI ID   WP_011821041.1    Uniprot ID   A2BYU0
Organism   Prochlorococcus marinus str. MIT 9515     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1531998..1537568 1531998..1533110 within 0


Gene organization within MGE regions


Location: 1531998..1537568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9515_RS08345 (P9515_17441) recA 1531998..1533110 (+) 1113 WP_011821041.1 recombinase RecA Machinery gene
  P9515_RS08350 (P9515_17451) - 1534066..1534293 (-) 228 WP_011821042.1 M protein -
  P9515_RS08355 (P9515_17461) - 1534294..1534416 (-) 123 Protein_1723 chlorophyll a/b-binding protein -
  P9515_RS08360 (P9515_17471) - 1534456..1534728 (-) 273 WP_011820202.1 chlorophyll a/b-binding protein -
  P9515_RS08365 (P9515_17481) - 1534728..1534937 (-) 210 WP_041710710.1 high light inducible protein -
  P9515_RS08370 (P9515_17491) - 1534937..1535044 (-) 108 WP_011132751.1 high light inducible protein -
  P9515_RS08375 (P9515_17501) - 1535847..1536092 (-) 246 WP_011821043.1 DUF2839 domain-containing protein -
  P9515_RS08380 (P9515_17511) - 1536120..1537568 (-) 1449 WP_011821044.1 DNA helicase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40057.83 Da        Isoelectric Point: 7.8517

>NTDB_id=27387 P9515_RS08345 WP_011821041.1 1531998..1533110(+) (recA) [Prochlorococcus marinus str. MIT 9515]
MSFEERRKKDSKESSSKEKDKALNLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPE
SSGKTTLTLHAIAEVQKNGGIAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSTAVDLVVVDSVAA
LTPRAEIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRI
QTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIW
LDQNLEIKKKVEGIVKSKLTEGTEVSSNSMKALNSNPENAVIANDIKTVA

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=27387 P9515_RS08345 WP_011821041.1 1531998..1533110(+) (recA) [Prochlorococcus marinus str. MIT 9515]
ATGAGTTTCGAAGAAAGGAGAAAAAAAGATTCAAAGGAATCCTCGTCTAAAGAGAAAGACAAAGCATTAAATCTAGTCTT
AGGACAGATAGAAAGAAACTTTGGTAGGGGATCAATAATGAGGCTTGGGGATGCCTCCAGAATGAAAGTAGAAACAATAT
CTACAGGTGCCCTTACATTAGACTTAGCACTAGGAGGGGGTTATCCAAAGGGAAGAGTCGTCGAGGTATACGGACCTGAG
AGTTCGGGAAAAACAACTCTCACGCTTCACGCAATCGCAGAGGTACAAAAAAACGGAGGCATAGCTGCATTTGTCGATGC
TGAACATGCTTTAGATCCAGTCTATGCTGCCTCTTTAGGAGTAGATGTTGAGAATTTACTAGTCTCACAACCAGATACAG
GTGAAATGGCTTTAGAAATAGTTGATCAGCTCATAAGATCAACTGCAGTTGACCTTGTAGTTGTTGACTCGGTAGCAGCT
CTAACTCCAAGAGCAGAAATAGAAGGTGAAATGGGAGATCACGTAATAGGGAGTCAAGCAAGGCTAATGAGTCAAGCGAT
GAGAAAAATAACCGGCAATATTGGAAAATCAGGATGTACAGTGATATTCCTCAATCAATTACGTTTGAAAATAGGTGTAA
CATATGGGAATCCAGAGACAACTACAGGAGGTAACGCATTAAAGTTTTATGCGTCAGTAAGACTTGATATTAGGAGAATT
CAGACTCTTAAAAGAGGTACAGAAGAATATGGAATAAGAGCAAAAGTAAAAGTAGCAAAAAATAAAGTCGCTCCTCCGTT
TAGAATTGCAGAATTTGATATCCTATTCGGTAAAGGCATTAGCACAACAGGATGTTTATTAGATTTAGCTGAAGAGACTA
ATATCATAATTAGAAGAGGTGCTTGGTATAGTTATGAAGGAGAAAATATTGGACAAGGAAGAGATAACACAATTATTTGG
TTGGATCAAAACTTGGAAATAAAGAAAAAAGTAGAAGGTATAGTAAAAAGCAAACTGACAGAAGGGACTGAAGTAAGCTC
TAACTCAATGAAGGCATTAAACAGTAATCCAGAAAATGCGGTAATTGCTAATGATATAAAAACAGTAGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2BYU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.907

87.027

0.565
  recA Acinetobacter baumannii D1279779

63.609

88.378

0.562
  recA Neisseria gonorrhoeae MS11

60.534

91.081

0.551
  recA Neisseria gonorrhoeae MS11

60.534

91.081

0.551
  recA Neisseria gonorrhoeae strain FA1090

60.534

91.081

0.551
  recA Pseudomonas stutzeri DSM 10701

62.733

87.027

0.546
  recA Streptococcus pneumoniae Rx1

56.461

96.216

0.543
  recA Streptococcus pneumoniae D39

56.461

96.216

0.543
  recA Streptococcus pneumoniae R6

56.461

96.216

0.543
  recA Streptococcus pneumoniae TIGR4

56.461

96.216

0.543
  recA Glaesserella parasuis strain SC1401

60.79

88.919

0.541
  recA Ralstonia pseudosolanacearum GMI1000

63.987

84.054

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

87.027

0.535
  recA Vibrio cholerae strain A1552

61.491

87.027

0.535
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.859

90

0.53
  recA Helicobacter pylori 26695

62.581

83.784

0.524
  recA Helicobacter pylori strain NCTC11637

62.581

83.784

0.524
  recA Streptococcus mitis NCTC 12261

57.396

91.351

0.524
  recA Streptococcus mitis SK321

57.101

91.351

0.522
  recA Streptococcus mutans UA159

58.308

89.459

0.522
  recA Bacillus subtilis subsp. subtilis str. 168

61.415

84.054

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.133

87.297

0.516
  recA Lactococcus lactis subsp. cremoris KW2

56.548

90.811

0.514
  recA Latilactobacillus sakei subsp. sakei 23K

59.683

85.135

0.508
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.193

91.081

0.503
  recA Streptococcus pyogenes NZ131

56.575

88.378

0.5

Multiple sequence alignment