Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A9601_RS17420 Genome accession   NC_008816
Coordinates   1501345..1502442 (+) Length   365 a.a.
NCBI ID   WP_011819174.1    Uniprot ID   A2BTE1
Organism   Prochlorococcus marinus str. AS9601     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1496345..1507442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9601_RS17385 (A9601_17631) - 1496923..1497225 (-) 303 WP_011819168.1 50S ribosomal protein L23 -
  A9601_RS17390 (A9601_17641) rplD 1497222..1497854 (-) 633 WP_011819169.1 50S ribosomal protein L4 -
  A9601_RS17395 (A9601_17651) rplC 1497851..1498504 (-) 654 WP_011819170.1 50S ribosomal protein L3 -
  A9601_RS17400 (A9601_17661) ndhN 1498784..1499260 (+) 477 WP_011819171.1 NAD(P)H-quinone oxidoreductase subunit N -
  A9601_RS17405 (A9601_17671) - 1499266..1500273 (+) 1008 WP_011819172.1 LdpA C-terminal domain-containing domain -
  A9601_RS17415 (A9601_17681) - 1500456..1501232 (+) 777 WP_011819173.1 HAD family hydrolase -
  A9601_RS17420 (A9601_17691) recA 1501345..1502442 (+) 1098 WP_011819174.1 recombinase RecA Machinery gene
  A9601_RS17425 (A9601_17701) - 1502445..1502690 (-) 246 WP_011819175.1 DUF2839 domain-containing protein -
  A9601_RS17430 (A9601_17711) - 1502720..1504168 (-) 1449 WP_011819176.1 DNA helicase -
  A9601_RS17435 (A9601_17721) - 1504264..1505103 (+) 840 WP_011819177.1 prephenate/arogenate dehydrogenase -
  A9601_RS17440 (A9601_17731) crtD 1505093..1506598 (-) 1506 WP_011819178.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39457.17 Da        Isoelectric Point: 6.7397

>NTDB_id=27379 A9601_RS17420 WP_011819174.1 1501345..1502442(+) (recA) [Prochlorococcus marinus str. AS9601]
MSLEEKKKTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKT
TLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRA
EIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRRIQTLKR
GTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNL
EIRNKVESMVKEKLTEGTEVSSNSMKALNSNPANTIAVNDIKTVA

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=27379 A9601_RS17420 WP_011819174.1 1501345..1502442(+) (recA) [Prochlorococcus marinus str. AS9601]
ATGAGCCTTGAAGAAAAGAAAAAAACTGAATCAAAAGAAAAAGACAAGGCATTAAGTCTTGTCTTAGGTCAAATAGAAAG
AAATTTTGGACGAGGATCAATAATGAGACTTGGTGACGCCTCAAGAATGAAAGTAGAAACAATATCTACTGGAGCGCTCA
CTTTAGATTTAGCATTAGGAGGAGGCTATCCCAAAGGAAGGGTAGTAGAGGTTTATGGACCAGAAAGTTCAGGAAAAACT
ACATTAACGCTGCACGCGATTGCGGAAGTCCAAAAGAATGGAGGAGTAGCAGCATTTGTAGATGCTGAGCATGCACTCGA
TCCAGTTTATGCAGCCTCTTTAGGAGTTGATGTTGAAAATTTGTTAGTCTCACAACCAGATACAGGTGAAATGGCTCTAG
AAATAGTTGACCAACTTATCAGATCAAGTGCAGTAGATCTTGTAGTTGTTGACTCGGTCGCAGCACTAACCCCAAGAGCC
GAGATAGAAGGAGAGATGGGAGATCACGTAATTGGAAGCCAAGCAAGGCTAATGAGCCAAGCAATGAGGAAAATAACAGG
AAATATTGGCAAATCTGGATGTACGGTAATATTCCTGAATCAATTACGCCTAAAAATTGGCGTTACATACGGCAATCCAG
AAACAACCACAGGAGGTAATGCATTAAAATTTTATGCCTCAGTGAGACTTGATATCAGAAGAATTCAAACTCTTAAAAGA
GGTACTGAAGAATATGGCATAAGAGCAAAAGTGAAAGTAGCAAAAAACAAAGTTGCACCTCCATTTAGAATTGCAGAGTT
TGATATTCTCTTCGGAAAAGGTATTAGTACAACAGGATGTTTATTAGATTTAGCAGAAGAGACTAATATCATAATAAGGA
GAGGCGCTTGGTATAGTTATGAAGGAGAAAATATTGGACAAGGAAGAGATAATACAATTATTTGGCTTGATCAAAACTTA
GAAATCAGGAATAAAGTAGAATCTATGGTTAAAGAGAAATTAACAGAAGGAACTGAAGTCAGTTCTAATTCAATGAAAGC
ATTAAATAGCAATCCTGCTAATACAATCGCTGTTAATGATATAAAAACAGTAGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2BTE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.217

88.219

0.575
  recA Acinetobacter baumannii D1279779

63.914

89.589

0.573
  recA Neisseria gonorrhoeae strain FA1090

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Streptococcus pneumoniae Rx1

55.738

100

0.559
  recA Streptococcus pneumoniae D39

55.738

100

0.559
  recA Streptococcus pneumoniae R6

55.738

100

0.559
  recA Streptococcus pneumoniae TIGR4

55.738

100

0.559
  recA Pseudomonas stutzeri DSM 10701

62.733

88.219

0.553
  recA Glaesserella parasuis strain SC1401

61.094

90.137

0.551
  recA Ralstonia pseudosolanacearum GMI1000

64.309

85.205

0.548
  recA Helicobacter pylori 26695

60.121

90.685

0.545
  recA Helicobacter pylori strain NCTC11637

60.121

90.685

0.545
  recA Vibrio cholerae strain A1552

61.491

88.219

0.542
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

88.219

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.574

90.137

0.537
  recA Streptococcus mitis NCTC 12261

56.034

95.342

0.534
  recA Streptococcus mitis SK321

55.747

95.342

0.532
  recA Streptococcus pyogenes NZ131

53.186

98.904

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.443

88.493

0.526
  recA Streptococcus mutans UA159

57.485

91.507

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

59.813

87.945

0.526
  recA Latilactobacillus sakei subsp. sakei 23K

59.062

87.671

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.535

90.137

0.51
  recA Lactococcus lactis subsp. cremoris KW2

57.407

88.767

0.51

Multiple sequence alignment