Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VEIS_RS01770 Genome accession   NC_008786
Coordinates   404799..405902 (-) Length   367 a.a.
NCBI ID   WP_011808162.1    Uniprot ID   A1WET8
Organism   Verminephrobacter eiseniae EF01-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 399799..410902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEIS_RS01755 (Veis_0352) - 399810..400541 (+) 732 WP_011808159.1 ABC transporter ATP-binding protein -
  VEIS_RS30140 - 400607..401038 (+) 432 Protein_366 ATP-binding cassette domain-containing protein -
  VEIS_RS30145 - 401405..402919 (+) 1515 WP_041950414.1 amidase -
  VEIS_RS01765 (Veis_0354) - 402916..404646 (+) 1731 WP_011808161.1 AMP-binding protein -
  VEIS_RS01770 (Veis_0355) recA 404799..405902 (-) 1104 WP_011808162.1 recombinase RecA Machinery gene
  VEIS_RS01775 (Veis_0356) - 406171..406593 (+) 423 WP_232287990.1 MarR family winged helix-turn-helix transcriptional regulator -
  VEIS_RS01780 (Veis_0357) - 406675..407355 (+) 681 WP_011808164.1 response regulator transcription factor -
  VEIS_RS01785 (Veis_0358) - 407459..408907 (+) 1449 WP_011808165.1 sensor histidine kinase -
  VEIS_RS28035 - 408888..409244 (-) 357 WP_157048351.1 hypothetical protein -
  VEIS_RS01790 - 409280..409468 (-) 189 WP_041949732.1 hypothetical protein -
  VEIS_RS01795 (Veis_0360) - 409642..410331 (-) 690 WP_011808167.1 ATP-dependent Clp protease proteolytic subunit -
  VEIS_RS29500 - 410514..410864 (-) 351 WP_198137942.1 hypothetical protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 38833.64 Da        Isoelectric Point: 5.5244

>NTDB_id=27306 VEIS_RS01770 WP_011808162.1 404799..405902(-) (recA) [Verminephrobacter eiseniae EF01-2]
MDVAVKGSHPAFPVNAEKAKALAAALAQIEKQFGKGTIMRLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP
ESSGKTTLALQVIAEMQKQGGTCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVA
ALTPKAEIEGDMGDALPGLQARLMSQALRKLTATIKKTNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR
TGTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKIVEKSGAWYAYNGEKIGQGRDNARE
FLRENPDLAHEIENKVRHSLGIALLPDAQPAPVLPGAQPAPAAAANG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=27306 VEIS_RS01770 WP_011808162.1 404799..405902(-) (recA) [Verminephrobacter eiseniae EF01-2]
ATGGACGTCGCAGTCAAAGGTAGCCACCCCGCATTCCCGGTCAATGCCGAAAAAGCCAAGGCACTCGCGGCCGCGCTGGC
CCAGATCGAAAAGCAATTCGGCAAGGGCACGATCATGCGCCTGGGCGAAGGCGAGGTGATCGAGGACATACAGGTCGTCT
CCACCGGCTCGCTGGGCCTGGACATCGCGCTGGGCGTGGGGGGACTGCCCCGTGGCCGGGTGGTTGAAATCTATGGCCCG
GAATCCTCGGGCAAGACCACGCTGGCGCTGCAGGTGATCGCCGAGATGCAAAAGCAGGGCGGCACCTGCGCCTTCGTCGA
TGCGGAGCATGCGCTGGACGTGCAATACGCGCAAAAACTCGGCGTGCAACTGTCCGACCTGCTGATCAGCCAGCCCGACA
CCGGCGAACAAGCGCTGGAGATCGTCGACAGCCTGGTGCGCTCCGGCGCGGTCGACCTGATCGTGGTGGACTCGGTGGCC
GCCCTGACGCCCAAGGCCGAGATCGAAGGCGACATGGGCGACGCCCTGCCGGGCCTGCAAGCGCGGCTGATGAGCCAGGC
ATTGCGCAAGCTCACCGCGACGATCAAGAAGACCAACTGCATGGTCGTCTTCATCAACCAGATCCGCATGAAGATCGGCG
TGATGTTCGGCAGCCCCGAAACCACCACCGGCGGCAATGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGC
ACCGGCACCATCAAGAAGGGCGATGAAGCCATTGGCAACGAAACCAAGGTCAAGGTGGTCAAGAACAAAGTCAGCCCGCC
GTTCAAGACCGCCGAGTTCGACATCCTGTTTGGCGAAGGCATCAGCCGCGAGGGCGAAATCATCGACATGGGCGTGAACG
CCAAGATCGTGGAAAAGTCGGGCGCCTGGTACGCCTACAACGGCGAAAAAATCGGCCAAGGCCGCGACAACGCGCGCGAA
TTCCTGCGCGAAAACCCCGACCTGGCCCACGAGATCGAAAACAAGGTGCGCCACAGCCTGGGCATCGCGCTGCTGCCCGA
CGCGCAGCCAGCCCCGGTGCTGCCCGGTGCGCAACCGGCCCCGGCGGCGGCCGCGAACGGGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1WET8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.133

90.463

0.752
  recA Neisseria gonorrhoeae MS11

72.561

89.373

0.649
  recA Neisseria gonorrhoeae MS11

72.561

89.373

0.649
  recA Neisseria gonorrhoeae strain FA1090

72.561

89.373

0.649
  recA Pseudomonas stutzeri DSM 10701

72.477

89.101

0.646
  recA Glaesserella parasuis strain SC1401

71.296

88.283

0.629
  recA Acinetobacter baylyi ADP1

71.207

88.011

0.627
  recA Acinetobacter baumannii D1279779

69.725

89.101

0.621
  recA Vibrio cholerae strain A1552

69.419

89.101

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.419

89.101

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.576

89.918

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.069

90.191

0.605
  recA Helicobacter pylori 26695

64.602

92.371

0.597
  recA Helicobacter pylori strain NCTC11637

64.602

92.371

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

89.101

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

63.746

90.191

0.575
  recA Lactococcus lactis subsp. cremoris KW2

60.882

92.643

0.564
  recA Streptococcus pyogenes NZ131

61.702

89.646

0.553
  recA Streptococcus mutans UA159

61.212

89.918

0.55
  recA Streptococcus pneumoniae D39

60.725

90.191

0.548
  recA Streptococcus pneumoniae TIGR4

60.725

90.191

0.548
  recA Streptococcus pneumoniae Rx1

60.725

90.191

0.548
  recA Streptococcus pneumoniae R6

60.725

90.191

0.548
  recA Streptococcus mitis SK321

60.423

90.191

0.545
  recA Streptococcus mitis NCTC 12261

60.423

90.191

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.429

88.828

0.537

Multiple sequence alignment