Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C3Y93_RS01980 Genome accession   NZ_CP026616
Coordinates   404220..405266 (-) Length   348 a.a.
NCBI ID   WP_104851910.1    Uniprot ID   A0A2L2LVZ6
Organism   Acinetobacter sp. SWBY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 401693..409759 404220..405266 within 0


Gene organization within MGE regions


Location: 401693..409759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS01960 (C3Y93_01960) - 401693..402076 (-) 384 WP_001055589.1 transposase -
  C3Y93_RS01965 (C3Y93_01965) - 402121..402964 (-) 844 Protein_382 YbgF trimerization domain-containing protein -
  C3Y93_RS01975 (C3Y93_01975) - 403457..404140 (-) 684 WP_104851909.1 regulatory protein RecX -
  C3Y93_RS01980 (C3Y93_01980) recA 404220..405266 (-) 1047 WP_104851910.1 recombinase RecA Machinery gene
  C3Y93_RS01985 (C3Y93_01985) - 405410..405850 (-) 441 WP_104851911.1 RNA-binding S4 domain-containing protein -
  C3Y93_RS01990 (C3Y93_01990) - 405843..406517 (-) 675 WP_096901429.1 HAD-IA family hydrolase -
  C3Y93_RS01995 (C3Y93_01995) - 406804..407049 (+) 246 WP_104851912.1 hypothetical protein -
  C3Y93_RS02000 (C3Y93_02000) - 407481..408046 (-) 566 Protein_388 IS630 family transposase -
  C3Y93_RS02005 (C3Y93_02005) - 408036..408491 (-) 456 WP_004973749.1 helix-turn-helix domain-containing protein -
  C3Y93_RS02010 (C3Y93_02010) - 408687..408866 (+) 180 WP_004976682.1 hypothetical protein -
  C3Y93_RS02015 (C3Y93_02015) - 408893..409759 (-) 867 WP_104851913.1 IS982-like element ISAba4 family transposase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37661.12 Da        Isoelectric Point: 5.0394

>NTDB_id=270893 C3Y93_RS01980 WP_104851910.1 404220..405266(-) (recA) [Acinetobacter sp. SWBY1]
MDENKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIIGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHLGELVDLAVQQNIVQKAGAWYSYQGDKIGQGKNNTIRHLEEHPELAKGIEA
IIREQLLTTGQAAPVEDKDEEEFDLLDV

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=270893 C3Y93_RS01980 WP_104851910.1 404220..405266(-) (recA) [Acinetobacter sp. SWBY1]
ATGGATGAGAATAAAAGCAAGGCGCTGAATGCCGCTTTAAGCCAAATTGAAAAGCAATTTGGAAAGAACACAGTGATGCG
TCTAGGTGACAACACTGTGCAAGCGGTAGAAGCAGTATCTACAGGCTCATTGACCCTAGACATCGCCTTGGGCATTGGCG
GTTTACCTAAAGGCCGTATTATTGAAATTTATGGCCCTGAATCATCAGGTAAAACGACAATGACCCTGCAAGCCATTGCA
GAGTGTCAAAAAGCAGGTGGAACCTGTGCCTTTATTGATGCCGAACACGCACTTGACCCTCAATATGCACGTAAACTTGG
TGTAGATATCGACAACTTATTGGTATCTCAGCCTGACAATGGTGAACAAGCCCTTGAAATTGCAGATATGCTGGTACGTT
CAGGTGCAATTGACCTGATTGTTGTCGACTCCGTTGCAGCCTTAACCCCTCGTGCCGAAATTGAAGGTGAAATGGGTGAC
TCACACATGGGCTTACAAGCTCGTTTAATGAGTCAGGCCTTACGTAAAATCACGGGTAACGCTAAACGCTCGAACTGTAT
GGTGATTTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAGCCCTGAAACGACCACGGGCGGTAACGCAC
TGAAATTCTATGCTTCTGTTCGTTTAGATATTCGTCGTGTAGGTCAGGTTAAAGAAGGTGACGAAATTATTGGTTCAGAA
ACCAAAGTTAAAGTCGTTAAAAATAAAATGGCTCCTCCATTTAAAGAAGCGCTATTCCAAATTCTTTATGGTAAAGGCGT
TAACCACTTAGGCGAGCTGGTCGATTTAGCCGTTCAACAAAATATCGTACAAAAAGCAGGTGCTTGGTACTCTTATCAAG
GCGATAAAATTGGTCAAGGTAAAAACAACACCATTCGCCACCTTGAAGAGCATCCTGAGCTTGCAAAAGGCATTGAAGCG
ATTATTCGTGAACAACTGTTGACTACAGGTCAAGCTGCCCCAGTAGAAGATAAAGACGAAGAAGAGTTTGACTTACTTGA
TGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L2LVZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

91.329

99.425

0.908
  recA Acinetobacter baylyi ADP1

90.517

100

0.905
  recA Pseudomonas stutzeri DSM 10701

73.529

97.701

0.718
  recA Vibrio cholerae strain A1552

73.7

93.966

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.966

0.693
  recA Glaesserella parasuis strain SC1401

71.605

93.103

0.667
  recA Ralstonia pseudosolanacearum GMI1000

71.069

91.379

0.649
  recA Neisseria gonorrhoeae MS11

67.284

93.103

0.626
  recA Neisseria gonorrhoeae MS11

67.284

93.103

0.626
  recA Neisseria gonorrhoeae strain FA1090

67.284

93.103

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.974

98.563

0.621
  recA Helicobacter pylori strain NCTC11637

62.029

99.138

0.615
  recA Helicobacter pylori 26695

61.739

99.138

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

95.115

0.609
  recA Streptococcus mitis SK321

60.411

97.989

0.592
  recA Streptococcus mitis NCTC 12261

60.117

97.989

0.589
  recA Streptococcus mutans UA159

62.195

94.253

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.27

93.678

0.583
  recA Streptococcus pyogenes NZ131

62.154

93.391

0.58
  recA Streptococcus pneumoniae Rx1

61.963

93.678

0.58
  recA Streptococcus pneumoniae D39

61.963

93.678

0.58
  recA Streptococcus pneumoniae R6

61.963

93.678

0.58
  recA Streptococcus pneumoniae TIGR4

61.963

93.678

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

61.801

92.529

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

58.16

96.839

0.563
  recA Lactococcus lactis subsp. cremoris KW2

59.133

92.816

0.549

Multiple sequence alignment