Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | C4E26_RS06565 | Genome accession | NZ_CP026614 |
| Coordinates | 1343783..1344829 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain R2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1338993..1389627 | 1343783..1344829 | within | 0 |
Gene organization within MGE regions
Location: 1338993..1389627
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4E26_RS06550 (C4E26_18000) | mnmH | 1340601..1341659 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| C4E26_RS06555 (C4E26_18005) | rimO | 1341653..1342987 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| C4E26_RS06560 (C4E26_18010) | pgsA | 1342974..1343516 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| C4E26_RS06565 (C4E26_18015) | recA | 1343783..1344829 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| C4E26_RS06570 (C4E26_18020) | rny | 1345005..1346546 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| C4E26_RS06575 (C4E26_18025) | - | 1346856..1349192 (+) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| C4E26_RS06585 (C4E26_18035) | - | 1349998..1350096 (+) | 99 | Protein_1175 | transposase | - |
| C4E26_RS06590 (C4E26_18040) | tnpB | 1350098..1351216 (+) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| C4E26_RS06600 (C4E26_18050) | - | 1351548..1353329 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| C4E26_RS06605 (C4E26_18055) | lepB | 1353409..1353939 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| C4E26_RS06610 (C4E26_18060) | - | 1353979..1354803 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| C4E26_RS06615 (C4E26_18065) | - | 1355060..1355971 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| C4E26_RS06620 (C4E26_18070) | purB | 1356110..1357555 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| C4E26_RS06625 (C4E26_18075) | - | 1357856..1358308 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| C4E26_RS06630 (C4E26_18080) | - | 1358527..1359723 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| C4E26_RS06635 (C4E26_18085) | galT | 1360108..1361058 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| C4E26_RS06640 (C4E26_18090) | - | 1361179..1361931 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| C4E26_RS06645 (C4E26_18095) | - | 1362023..1362799 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| C4E26_RS06650 (C4E26_18100) | - | 1363114..1365012 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| C4E26_RS06655 (C4E26_18105) | - | 1365140..1366261 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| C4E26_RS06660 (C4E26_18110) | - | 1366460..1366792 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| C4E26_RS06665 (C4E26_18115) | - | 1366779..1367837 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| C4E26_RS06670 (C4E26_18120) | - | 1367830..1368900 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| C4E26_RS06675 (C4E26_18125) | - | 1369002..1369538 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| C4E26_RS06680 (C4E26_18130) | - | 1369658..1370365 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| C4E26_RS06685 (C4E26_18135) | - | 1370367..1371086 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| C4E26_RS06690 (C4E26_18140) | - | 1371088..1371858 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| C4E26_RS06695 (C4E26_18145) | - | 1371992..1373383 (+) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| C4E26_RS06700 (C4E26_18150) | - | 1373459..1374280 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| C4E26_RS06705 (C4E26_18155) | - | 1374531..1375685 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| C4E26_RS06710 (C4E26_18160) | - | 1375868..1376068 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| C4E26_RS06715 (C4E26_18165) | - | 1376489..1376917 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| C4E26_RS06720 (C4E26_18170) | - | 1377060..1377815 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| C4E26_RS06730 (C4E26_18180) | - | 1378516..1379022 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| C4E26_RS06735 (C4E26_18185) | - | 1379104..1379424 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| C4E26_RS06740 (C4E26_18190) | - | 1379593..1379790 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| C4E26_RS06745 (C4E26_18195) | - | 1379894..1380334 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| C4E26_RS06750 (C4E26_18200) | - | 1380583..1381026 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| C4E26_RS06755 (C4E26_18205) | - | 1381031..1382095 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| C4E26_RS06760 (C4E26_18210) | - | 1382109..1382537 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| C4E26_RS06765 (C4E26_18215) | - | 1382651..1383097 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| C4E26_RS06775 (C4E26_18225) | - | 1383291..1385744 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| C4E26_RS06780 (C4E26_18230) | - | 1385744..1386166 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| C4E26_RS06785 (C4E26_18235) | - | 1386448..1387977 (+) | 1530 | WP_003419653.1 | NlpC/P60 family protein | - |
| C4E26_RS06790 (C4E26_18240) | - | 1387993..1388319 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| C4E26_RS06795 (C4E26_18245) | - | 1388319..1388747 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=270864 C4E26_RS06565 WP_003419530.1 1343783..1344829(+) (recA) [Clostridioides difficile strain R2]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=270864 C4E26_RS06565 WP_003419530.1 1343783..1344829(+) (recA) [Clostridioides difficile strain R2]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.