Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SGO_RS05535 Genome accession   NC_009785
Coordinates   1171511..1172581 (+) Length   356 a.a.
NCBI ID   WP_012000536.1    Uniprot ID   A8AXA5
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1166511..1177581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS05510 (SGO_1122) - 1166693..1167025 (+) 333 WP_012000533.1 putative DNA-binding protein -
  SGO_RS05515 - 1167028..1167243 (+) 216 WP_041789672.1 hypothetical protein -
  SGO_RS05520 (SGO_1123) ffh 1167272..1168846 (+) 1575 WP_012000534.1 signal recognition particle protein -
  SGO_RS05525 (SGO_1124) - 1168925..1169728 (+) 804 WP_012000535.1 alpha/beta hydrolase -
  SGO_RS05530 (SGO_1125) - 1170166..1170786 (+) 621 WP_008808684.1 tetratricopeptide repeat protein -
  SGO_RS05535 (SGO_1126) xerS 1171511..1172581 (+) 1071 WP_012000536.1 tyrosine recombinase XerS Machinery gene
  SGO_RS05540 (SGO_1127) - 1172658..1173290 (-) 633 WP_012000537.1 ABC transporter ATP-binding protein -
  SGO_RS05545 (SGO_1128) - 1173292..1175301 (-) 2010 WP_041789674.1 DUF1430 domain-containing protein -
  SGO_RS05550 (SGO_1129) - 1175450..1176439 (-) 990 WP_012000539.1 lipoate--protein ligase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41351.51 Da        Isoelectric Point: 9.7316

>NTDB_id=27064 SGO_RS05535 WP_012000536.1 1171511..1172581(+) (xerS) [Streptococcus gordonii str. Challis substr. CH1]
MRRELLLERIDKLKATMPWYILEYYQSKLAVPYSFTTLYEYLKEYDRFFNWVLESGITNASHIAEIPLSVLENMTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENEQGEPYFYRNVMKKVATKKKKETLAARAENIKQK
LFLGDETEEFLQYIDREYPKKLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIEVTRKGGKRDS
VNVAAFAKPYLEEYLSIRSKRYKAEKTDTAFFLTEYRGTPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALNKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=27064 SGO_RS05535 WP_012000536.1 1171511..1172581(+) (xerS) [Streptococcus gordonii str. Challis substr. CH1]
ATGAGACGTGAACTGTTATTAGAAAGAATTGATAAACTCAAGGCCACTATGCCCTGGTACATTTTGGAATATTATCAGTC
TAAGCTGGCGGTGCCATATAGTTTTACAACCTTGTATGAATATTTAAAAGAATATGATCGCTTTTTTAATTGGGTGCTAG
AATCTGGCATAACGAATGCTTCGCATATTGCTGAGATCCCTCTCTCGGTCTTGGAAAATATGACCAAGAAAGACATGGAG
GCCTTTATTCTTTATCTGCGAGAGCGACCGCTTCTCAATGCCAATACAACTCAAAACGGTGTTTCCCAGACAACTATTAA
CCGGACTCTCTCAGCTTTGTCCAGCCTATACAAATATTTGACTGAGGAAGTTGAAAACGAGCAGGGTGAGCCCTACTTCT
ATCGAAATGTGATGAAAAAGGTTGCTACTAAGAAGAAAAAGGAAACTCTAGCTGCTCGTGCTGAGAATATTAAGCAGAAG
CTTTTTTTAGGGGATGAGACAGAAGAATTTCTCCAGTATATTGATAGGGAGTACCCTAAGAAGCTCTCTAATCGCGCCCT
GTCCTCCTTCAACAAGAACAAAGAACGAGATTTAGCCATCATTGCCTTGCTGTTAGCCTCTGGTGTTCGTCTGTCTGAAG
CTGTCAATCTGGACCTAAAAGACATCAATCTCAAAATGATGGTCATTGAAGTGACAAGAAAAGGCGGAAAAAGGGACTCT
GTCAATGTTGCTGCTTTTGCTAAGCCCTATTTAGAAGAGTACCTGAGTATTCGGAGCAAACGATACAAGGCCGAAAAGAC
TGATACAGCCTTCTTTTTGACTGAATACCGTGGCACTCCTAATCGAATCGATGCTTCCAGTGTCGAAAAAATGGTAGCTA
AGTATTCTGAGGACTTCAAGGTGCGAGTGACGCCTCACAAACTCCGCCACACACTTGCTACACGTTTATACGATGCAACC
AAATCTCAAGTTCTCGTCAGCCATCAGCTAGGACATGCTAGCACTCAGGTAACAGACCTCTACACCCATATTGTCAACGA
CGAGCAAAAGAATGCTTTGAATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(189-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AXA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

89.888

100

0.899

Multiple sequence alignment