Detailed information NTG0027064

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: SAMA_RS05450
• Genome accession: NC_008700
• Coordinates: 1265502..1266569 (+)
• Length: 355 a.a.
• NCBI ID: WP_011759162.1
• Uniprot ID: A1S4E7
• Organism: Shewanella amazonensis SB2B
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1260502..1271569

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAMA_RS05435 (Sama_1043)	-	1260578..1261468 (+)	891	WP_011759159.1	peptidoglycan DD-metalloendopeptidase family protein	-
SAMA_RS05440 (Sama_1044)	rpoS	1261552..1262535 (+)	984	WP_011759160.1	RNA polymerase sigma factor RpoS	-
SAMA_RS05445 (Sama_1045)	mutS	1262651..1265215 (-)	2565	WP_011759161.1	DNA mismatch repair protein MutS	-
SAMA_RS05450 (Sama_1046)	recA	1265502..1266569 (+)	1068	WP_011759162.1	recombinase RecA	Machinery gene
SAMA_RS05455 (Sama_1047)	-	1266581..1267018 (+)	438	WP_011759163.1	regulatory protein RecX	-
SAMA_RS05460 (Sama_1048)	alaS	1267234..1269855 (+)	2622	WP_041410151.1	alanine--tRNA ligase	-
SAMA_RS05465 (Sama_1049)	-	1269889..1271100 (+)	1212	WP_011759165.1	aspartate kinase	-
SAMA_RS05470 (Sama_1050)	csrA	1271214..1271408 (+)	195	WP_011759166.1	carbon storage regulator CsrA	-

Sequence

Protein

• Length: 355 a.a.
• Molecular weight: 38090.48 Da
• Isoelectric Point: 4.8219

>NTDB_id=27064 SAMA_RS05450 WP_011759162.1 1265502..1266569(+) (recA) [Shewanella amazonensis SB2B]
MKIDPNKEKALAAVLGQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKVCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALVPKAEIEGEI
GDSHVGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKIAAPFRQADFQILYGQGINRTGELVDLGVLHKLIEKSGAWYSYKGDKIGQGRANATKFLAENTEIAAEI
EKTLREMLLSHSSSSGSADEVEGDENIDFETGEVF

Nucleotide

• Length: 1068 bp

>NTDB_id=27064 SAMA_RS05450 WP_011759162.1 1265502..1266569(+) (recA) [Shewanella amazonensis SB2B]
ATGAAAATCGATCCAAATAAAGAGAAAGCACTGGCCGCCGTTCTTGGCCAAATTGAAAAGCAATTTGGTAAAGGCTCCAT
CATGAAGCTGGGCGAAGACCGCTCCATGGATGTGGAAACTATCTCCACCGGCTCGCTGTCTCTGGACGTGGCTCTTGGTG
CAGGCGGTCTGCCAATGGGCCGTATCGTAGAAATCTATGGTCCTGAATCATCAGGTAAAACCACCCTGACTCTCGAAGTG
ATTGCTGCGGCTCAGCGCGAAGGCAAAGTGTGTGCCTTTATCGATGCTGAACACGCCCTTGACCCTGTATATGCCCGTAA
GCTCGGTGTAGATATCGATAATCTGCTTTGCTCTCAGCCAGACACAGGTGAACAGGCACTGGAAATCTGTGATGCTTTGA
CCCGCAGTGGTGCCGTTGACGTTATCATCGTGGACTCGGTAGCCGCACTGGTTCCCAAGGCCGAAATCGAAGGTGAAATT
GGCGACTCTCACGTAGGTCTTGCCGCCCGTATGATGAGCCAGGCAATGCGTAAGCTTGCCGGTAACCTCAAGCAGTCCAA
TACCCTGCTGATTTTCATCAACCAAATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCTGAAACCACCACAGGTGGAA
ACGCCCTGAAGTTTTACGCTTCAGTGCGTCTGGATATTCGCCGCACCGGCGCCATTAAAGAAGGCGACGAAGTGGTGGGT
AACGAAACCCGCGTGAAAGTGGTTAAAAACAAGATTGCTGCGCCTTTCCGCCAGGCAGATTTCCAGATCCTCTATGGTCA
GGGAATTAACCGTACCGGCGAGCTGGTCGACCTGGGTGTACTGCACAAGCTGATTGAAAAATCCGGTGCCTGGTACAGCT
ATAAGGGCGACAAGATTGGTCAGGGCCGCGCCAACGCGACCAAGTTCCTGGCTGAAAATACTGAAATTGCAGCCGAAATT
GAAAAGACACTGCGTGAAATGCTGCTGTCACACAGCTCATCTTCCGGTAGTGCCGATGAAGTAGAAGGCGATGAAAACAT
CGACTTCGAAACCGGAGAAGTGTTCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

3D structure

• AlphaFold DB: A1S4E7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	81.214	97.465	0.792
recA	Vibrio cholerae O1 biovar El Tor strain E7946	81.214	97.465	0.792
recA	Pseudomonas stutzeri DSM 10701	75.075	93.803	0.704
recA	Glaesserella parasuis strain SC1401	68	98.592	0.67
recA	Acinetobacter baylyi ADP1	68.786	97.465	0.67
recA	Acinetobacter baumannii D1279779	68.012	97.746	0.665
recA	Ralstonia pseudosolanacearum GMI1000	70.427	92.394	0.651
recA	Neisseria gonorrhoeae MS11	67.742	96.056	0.651
recA	Neisseria gonorrhoeae MS11	67.742	96.056	0.651
recA	Neisseria gonorrhoeae strain FA1090	67.742	96.056	0.651
recA	Streptococcus pneumoniae D39	58.449	100	0.594
recA	Streptococcus pneumoniae TIGR4	58.449	100	0.594
recA	Streptococcus pneumoniae R6	58.449	100	0.594
recA	Streptococcus pneumoniae Rx1	58.449	100	0.594
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	60.756	96.901	0.589
recA	Streptococcus mutans UA159	58.31	100	0.583
recA	Streptococcus mitis SK321	62.195	92.394	0.575
recA	Streptococcus mitis NCTC 12261	62.195	92.394	0.575
recA	Bacillus subtilis subsp. subtilis str. 168	63.551	90.423	0.575
recA	Helicobacter pylori strain NCTC11637	58.944	96.056	0.566
recA	Helicobacter pylori 26695	58.651	96.056	0.563
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	59.76	93.803	0.561
recA	Streptococcus pyogenes NZ131	60.366	92.394	0.558
recA	Latilactobacillus sakei subsp. sakei 23K	61.129	89.859	0.549
recA	Lactococcus lactis subsp. cremoris KW2	59.451	92.394	0.549
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.683	88.732	0.53