Detailed information NTG0027031

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: BAD_RS05455
• Genome accession: NC_008618
• Coordinates: 1271525..1272667 (-)
• Length: 380 a.a.
• NCBI ID: WP_003810592.1
• Uniprot ID: A0A087DQC8
• Organism: Bifidobacterium adolescentis ATCC 15703
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	1244516..1289030	1271525..1272667	within	0

Gene organization within MGE regions

Location: 1244516..1289030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAD_RS05375 (BAD_1007)	-	1244815..1247490 (+)	2676	WP_011743368.1	DNA gyrase/topoisomerase IV subunit A	-
BAD_RS05380 (BAD_1008)	-	1247614..1252458 (-)	4845	WP_167524181.1	DEAD/DEAH box helicase	-
BAD_RS05385 (BAD_1009)	-	1252585..1253817 (-)	1233	WP_011743370.1	MFS transporter	-
BAD_RS05390 (BAD_1010)	-	1254011..1256335 (-)	2325	WP_003810563.1	DNA gyrase/topoisomerase IV subunit B	-
BAD_RS05395 (BAD_1011)	-	1256430..1257869 (-)	1440	WP_011743371.1	RNA polymerase sigma factor	-
BAD_RS05400 (BAD_1012)	-	1257991..1258635 (-)	645	WP_011743372.1	DUF4192 family protein	-
BAD_RS05405 (BAD_1013)	-	1258845..1259933 (+)	1089	WP_003810570.1	polyprenyl synthetase family protein	-
BAD_RS05410 (BAD_1014)	-	1260056..1262227 (+)	2172	WP_003810572.1	Stk1 family PASTA domain-containing Ser/Thr kinase	-
BAD_RS05415 (BAD_1015)	-	1262326..1263054 (-)	729	WP_011743374.1	lysophospholipid acyltransferase family protein	-
BAD_RS05420 (BAD_1016)	-	1263105..1263671 (+)	567	WP_011743375.1	hypothetical protein	-
BAD_RS08860 (BAD_1017)	-	1263773..1264617 (-)	845	Protein_1056	IS3 family transposase	-
BAD_RS09190 (BAD_1018)	-	1264578..1265130 (-)	553	Protein_1057	transposase	-
BAD_RS05435 (BAD_1019)	trpD	1265241..1266296 (-)	1056	WP_021913818.1	anthranilate phosphoribosyltransferase	-
BAD_RS05440 (BAD_1020)	secA	1266487..1269363 (-)	2877	WP_011743379.1	preprotein translocase subunit SecA	-
BAD_RS05445 (BAD_1021)	hpf	1269542..1270204 (-)	663	WP_003810589.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
BAD_RS05450 (BAD_1023)	-	1270826..1271521 (-)	696	WP_003810591.1	regulatory protein RecX	-
BAD_RS05455 (BAD_1024)	recA	1271525..1272667 (-)	1143	WP_003810592.1	recombinase RecA	Machinery gene
BAD_RS08865	-	1272930..1273163 (-)	234	WP_080505092.1	DUF3046 domain-containing protein	-
BAD_RS05460 (BAD_1026)	-	1273246..1273755 (-)	510	WP_021913821.1	helix-turn-helix domain-containing protein	-
BAD_RS05465 (BAD_1027)	-	1273818..1274384 (-)	567	WP_033499691.1	CinA family protein	-
BAD_RS05470 (BAD_1028)	pgsA	1274391..1275065 (-)	675	WP_011743385.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
BAD_RS05475 (BAD_1029)	-	1275125..1277929 (-)	2805	WP_011743386.1	FtsK/SpoIIIE family DNA translocase	-
BAD_RS05480 (BAD_1030)	-	1278193..1281201 (+)	3009	WP_011743387.1	carbohydrate binding domain-containing protein	-
BAD_RS05485 (BAD_1031)	miaA	1281330..1282340 (-)	1011	WP_011743388.1	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	-
BAD_RS05490 (BAD_1032)	miaB	1282324..1283778 (-)	1455	WP_021913826.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-
BAD_RS05495 (BAD_1033)	-	1283969..1284652 (+)	684	WP_021913827.1	GTP pyrophosphokinase	-
BAD_RS05500 (BAD_1034)	-	1284724..1285674 (-)	951	WP_011743391.1	DMT family transporter	-
BAD_RS05505 (BAD_1035)	-	1285801..1286682 (-)	882	WP_003810620.1	Bax inhibitor-1/YccA family protein	-
BAD_RS05510 (BAD_1036)	-	1286799..1287569 (-)	771	WP_011743392.1	DUF5067 domain-containing protein	-

Sequence

Protein

• Length: 380 a.a.
• Molecular weight: 40228.64 Da
• Isoelectric Point: 5.3563

>NTDB_id=27031 BAD_RS05455 WP_003810592.1 1271525..1272667(-) (recA) [Bifidobacterium adolescentis ATCC 15703]
MAQTSAAKNAAQNKSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPEQDVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKAGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRM
DIRRIQTIKNGDEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQANVVKKSGSWFTYEGDQLGQGRE
NVRQFLKDNPELTEEIENKVKAAFGLIKPTDQFAEDDGAEDAAGAPDDGKTSKTSKAAKA

Nucleotide

• Length: 1143 bp

>NTDB_id=27031 BAD_RS05455 WP_003810592.1 1271525..1272667(-) (recA) [Bifidobacterium adolescentis ATCC 15703]
ATGGCACAGACGAGCGCGGCAAAGAACGCCGCACAGAACAAGTCCGCGAATGGAATCGATCCGCGCCGTCAGGCCGCGCT
CGACACAGCGCTCGCGCAGGTCGAGAAAAGCTTCGGCAAGGGATCGGCCATGAGACTTGGCGACCGCCCGGAACAGGATG
TCGAGGTCATTCCGACCGGATCCTTGGCTTTGGATATGGCATTAGGCATCGGCGGCCTGCCTAAAGGCCGTATTGTGGAG
ATTTACGGACCGGAATCCTCTGGTAAGACCACATTGGCGCTGCATGTGGTGGCCAATGCCCAGAAGGCCGGCGGTGTGGC
CGCATTCATCGATGCCGAGCATGCGCTCGATCCGGTCTATGCCCGTAAGCTGGGCGTCGACACCGATTCGTTGATCGTCT
CTCAGCCGGACAATGGCGAGCAGGCATTGGAAATCGCCGACATGCTGATTCGTTCCGGCGCGCTTGACGTGATTGTCATC
GATTCCGTCGCGGCCTTGGTGCCGAAAGCGGAAATCGAAGGCGAGATGGGAGACAGCCATGTCGGCCTGCAGGCGCGCCT
GATGAGTCAGGCGTTGCGTAAGATGACCGGTGCGCTGGCGCAAGCCGGTACCACCGCCATCTTCATCAACCAGTTGCGTG
AGAAAATTGGCGTGTTCTTCGGTAATCCGGAGACCACCACCGGCGGCAAGGCATTGAAGTTCTACGCGTCCGTACGTATG
GACATCCGCCGTATCCAGACCATTAAGAACGGTGATGAGGCTGTCGGCAACCGTACTAAGGTCAAGGTTGTTAAGAACAA
GATGGCTCCGCCGTTCAAGACCGCCGAATTCGATGTGCTGTACGGCGAGGGCATCTCCAAGGAAGGTTCCGTGCTTGATA
TGGCGTTGCAGGCCAACGTCGTCAAAAAGTCTGGCTCGTGGTTCACCTATGAGGGCGACCAGCTGGGGCAAGGACGCGAA
AACGTGCGTCAGTTCCTCAAGGACAATCCGGAACTCACAGAGGAAATCGAGAACAAGGTCAAGGCGGCATTCGGTCTGAT
CAAACCTACCGACCAGTTCGCCGAGGACGATGGGGCGGAGGACGCCGCGGGCGCGCCGGATGATGGTAAGACGTCCAAAA
CTTCAAAAGCCGCCAAAGCCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (26-286)

3D structure

• AlphaFold DB: A0A087DQC8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Acinetobacter baylyi ADP1	64.723	90.263	0.584
recA	Acinetobacter baumannii D1279779	66.254	85	0.563
recA	Vibrio cholerae strain A1552	62.029	90.789	0.563
recA	Vibrio cholerae O1 biovar El Tor strain E7946	62.029	90.789	0.563
recA	Ralstonia pseudosolanacearum GMI1000	67.732	82.368	0.558
recA	Bacillus subtilis subsp. subtilis str. 168	65.432	85.263	0.558
recA	Pseudomonas stutzeri DSM 10701	64.724	85.789	0.555
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	64.923	85.526	0.555
recA	Streptococcus mitis NCTC 12261	63.526	86.579	0.55
recA	Streptococcus mitis SK321	63.526	86.579	0.55
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	60.933	90.263	0.55
recA	Glaesserella parasuis strain SC1401	62.388	88.158	0.55
recA	Streptococcus pneumoniae Rx1	62.918	86.579	0.545
recA	Streptococcus pneumoniae TIGR4	62.918	86.579	0.545
recA	Streptococcus pneumoniae R6	62.918	86.579	0.545
recA	Streptococcus pneumoniae D39	62.918	86.579	0.545
recA	Neisseria gonorrhoeae strain FA1090	65.397	82.895	0.542
recA	Neisseria gonorrhoeae MS11	65.397	82.895	0.542
recA	Neisseria gonorrhoeae MS11	65.397	82.895	0.542
recA	Streptococcus pyogenes NZ131	62.424	86.842	0.542
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60.177	89.211	0.537
recA	Lactococcus lactis subsp. cremoris KW2	62.006	86.579	0.537
recA	Streptococcus mutans UA159	61.818	86.842	0.537
recA	Helicobacter pylori strain NCTC11637	61.89	86.316	0.534
recA	Helicobacter pylori 26695	61.89	86.316	0.534
recA	Latilactobacillus sakei subsp. sakei 23K	62.346	85.263	0.532