Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C3K08_RS01370 Genome accession   NZ_CP026516
Coordinates   248990..250069 (-) Length   359 a.a.
NCBI ID   WP_104989711.1    Uniprot ID   -
Organism   Deinococcus sp. NW-56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 243990..255069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K08_RS01345 - 244204..245142 (+) 939 WP_104989706.1 biotin--[acetyl-CoA-carboxylase] ligase -
  C3K08_RS01350 - 245139..245717 (+) 579 WP_104989707.1 biotin transporter BioY -
  C3K08_RS01355 - 245781..247652 (-) 1872 WP_104989708.1 glycoside hydrolase family 2 protein -
  C3K08_RS17770 - 247978..248148 (-) 171 WP_158679807.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  C3K08_RS01360 - 248180..248524 (-) 345 WP_234009112.1 PIN domain-containing protein -
  C3K08_RS01365 - 248584..248835 (-) 252 WP_104989710.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  C3K08_RS01370 recA 248990..250069 (-) 1080 WP_104989711.1 recombinase RecA Machinery gene
  C3K08_RS01375 thpR 250066..250866 (-) 801 WP_104989712.1 RNA 2',3'-cyclic phosphodiesterase -
  C3K08_RS01380 - 250863..252080 (-) 1218 WP_104989713.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  C3K08_RS01385 - 252213..253598 (+) 1386 WP_104989714.1 NCS2 family permease -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38063.64 Da        Isoelectric Point: 5.3637

>NTDB_id=270046 C3K08_RS01370 WP_104989711.1 248990..250069(-) (recA) [Deinococcus sp. NW-56]
MSKDTPKDFGTPGDSKERSKAIETAMTQIEKAFGKGSIMRLGAESKLDVQAVSTGSLSLDLALGVGGIPRGRITEIYGPE
SGGKTTLALSIIAQAQKAGGTCAFIDAEHALDPVYARSLGVSTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAA
LTPRAEIEGEMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYSSVRLDVRKI
GQPVKLGNDAVGNTVKVKTVKNKVAPPFKEVELTLMYGKGFDQLSDLVTLASDMDIIKKAGSFYSYGEDRIGQGKEKAIQ
YIAERPEMEAEIRERVLAAIKEGRTGDVGAVASVPAVAE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=270046 C3K08_RS01370 WP_104989711.1 248990..250069(-) (recA) [Deinococcus sp. NW-56]
ATGAGCAAGGACACCCCCAAGGACTTCGGCACCCCCGGCGACAGCAAGGAACGCTCCAAGGCCATCGAGACGGCCATGAC
CCAGATCGAGAAGGCCTTCGGCAAGGGCTCGATCATGCGGCTGGGCGCCGAGAGCAAGCTCGACGTGCAGGCGGTCAGCA
CCGGCAGCCTCAGCCTCGACCTCGCGCTGGGCGTGGGCGGCATTCCGCGCGGGCGCATCACCGAGATCTACGGCCCCGAG
TCGGGCGGCAAGACCACCCTGGCCCTCTCGATCATCGCGCAGGCCCAGAAGGCGGGCGGCACCTGCGCCTTTATCGACGC
CGAGCACGCCCTCGACCCTGTGTACGCCCGCAGCCTCGGCGTGAGCACCGACGAGCTGCTCGTCTCGCAGCCCGACAACG
GCGAGCAGGCGCTGGAGATCATGGAGTTGCTGGTGCGTTCGGGCGCGATCGACGTGGTCGTCGTGGACTCGGTCGCCGCG
CTGACCCCCCGCGCCGAGATCGAGGGCGAGATGGGCGACTCGCTGCCCGGCCTCCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACCGCGATTCTGTCCAAGACGGGCACCGCCGCCATCTTCATCAACCAGGTGCGCGAGAAGATCGGCGTGA
TGTACGGCAACCCCGAAACCACCACCGGCGGCCGGGCGCTGAAGTTCTACTCCAGCGTGCGCCTCGACGTGCGCAAGATC
GGCCAGCCGGTCAAGCTGGGCAACGACGCCGTGGGCAACACGGTGAAGGTCAAGACCGTGAAGAACAAGGTCGCGCCCCC
CTTCAAGGAGGTCGAGCTGACCCTGATGTACGGCAAGGGCTTCGACCAGCTCAGCGACCTCGTGACGCTGGCGTCCGACA
TGGACATCATCAAGAAGGCCGGGTCCTTTTACTCCTACGGGGAAGACCGCATCGGCCAGGGCAAGGAAAAGGCCATCCAG
TACATCGCCGAGCGCCCTGAAATGGAAGCCGAGATCCGCGAGCGCGTCCTCGCCGCGATCAAGGAAGGCCGCACCGGGGA
CGTGGGCGCGGTGGCGAGCGTGCCCGCCGTCGCCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

89.796

95.543

0.858
  recA Acinetobacter baumannii D1279779

64.118

94.708

0.607
  recA Acinetobacter baylyi ADP1

65.432

90.251

0.591
  recA Glaesserella parasuis strain SC1401

65.528

89.694

0.588
  recA Streptococcus pneumoniae Rx1

62.763

92.758

0.582
  recA Streptococcus mitis SK321

62.763

92.758

0.582
  recA Streptococcus pneumoniae TIGR4

62.763

92.758

0.582
  recA Streptococcus pneumoniae R6

62.763

92.758

0.582
  recA Streptococcus pneumoniae D39

62.763

92.758

0.582
  recA Streptococcus mitis NCTC 12261

62.462

92.758

0.579
  recA Streptococcus pyogenes NZ131

59.763

94.15

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

62.229

89.972

0.56
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.656

90.808

0.56
  recA Vibrio cholerae strain A1552

61.656

90.808

0.56
  recA Streptococcus mutans UA159

59.467

94.15

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

62.187

89.136

0.554
  recA Neisseria gonorrhoeae MS11

60.308

90.529

0.546
  recA Neisseria gonorrhoeae strain FA1090

60.308

90.529

0.546
  recA Neisseria gonorrhoeae MS11

60.308

90.529

0.546
  recA Lactococcus lactis subsp. cremoris KW2

56.932

94.429

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.38

93.872

0.529
  recA Ralstonia pseudosolanacearum GMI1000

61.364

85.794

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.75

89.136

0.524
  recA Pseudomonas stutzeri DSM 10701

57.846

90.529

0.524
  recA Helicobacter pylori strain NCTC11637

57.362

90.808

0.521
  recA Helicobacter pylori 26695

57.055

90.808

0.518

Multiple sequence alignment