Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C3F22_RS07615 Genome accession   NZ_CP026420
Coordinates   1542715..1543758 (+) Length   347 a.a.
NCBI ID   WP_104426198.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1537715..1548758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS07580 (C3F22_07590) rraA 1537725..1538234 (-) 510 WP_104426194.1 ribonuclease E activity regulator RraA -
  C3F22_RS07585 (C3F22_07595) - 1538247..1538912 (-) 666 WP_034702612.1 NAD-dependent epimerase/dehydratase family protein -
  C3F22_RS07590 (C3F22_07600) rpsT 1539126..1539395 (+) 270 WP_004786139.1 30S ribosomal protein S20 -
  C3F22_RS18535 - 1539533..1539655 (-) 123 WP_004786141.1 hypothetical protein -
  C3F22_RS07595 (C3F22_07605) - 1539776..1540525 (-) 750 WP_104426195.1 histidine phosphatase family protein -
  C3F22_RS07600 (C3F22_07610) - 1540586..1541437 (-) 852 WP_104426196.1 3'(2'),5'-bisphosphate nucleotidase CysQ family protein -
  C3F22_RS07605 (C3F22_07615) - 1541450..1542136 (+) 687 WP_104426197.1 HAD hydrolase-like protein -
  C3F22_RS07610 (C3F22_07620) - 1542129..1542569 (+) 441 WP_004786147.1 RNA-binding S4 domain-containing protein -
  C3F22_RS07615 (C3F22_07625) recA 1542715..1543758 (+) 1044 WP_104426198.1 recombinase RecA Machinery gene
  C3F22_RS07620 (C3F22_07630) - 1543834..1544448 (+) 615 WP_104426199.1 regulatory protein RecX -
  C3F22_RS07630 (C3F22_07640) - 1545150..1545953 (+) 804 WP_104426200.1 YbgF trimerization domain-containing protein -
  C3F22_RS07635 (C3F22_07645) - 1546085..1547236 (+) 1152 WP_058951619.1 IS4-like element ISAbe18 family transposase -
  C3F22_RS07640 (C3F22_07650) lpxA 1547301..1548089 (-) 789 WP_004786156.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  C3F22_RS07645 (C3F22_07655) fabZ 1548086..1548571 (-) 486 WP_171064833.1 3-hydroxyacyl-ACP dehydratase FabZ -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37807.26 Da        Isoelectric Point: 4.9603

>NTDB_id=269227 C3F22_RS07615 WP_104426198.1 1542715..1543758(+) (recA) [Acinetobacter sp. ACNIH1]
MDENKNKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRYLEEHKELADTIEK
LIREQLLTTSKVVEDKDEEEPADFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=269227 C3F22_RS07615 WP_104426198.1 1542715..1543758(+) (recA) [Acinetobacter sp. ACNIH1]
ATGGATGAGAATAAAAACAAGGCGCTCAACGCTGCCTTAAGCCAGATTGAAAAACAGTTTGGTAAAAACACAGTGATGCG
TCTTGGTGACAATACCGTGCAAGCAGTTGAAGCTGTATCTACAGGTTCTTTAACGCTTGATATCGCACTGGGTATTGGTG
GTTTACCGAAAGGCCGTATTATCGAGATTTATGGTCCTGAATCTTCAGGTAAAACCACAATGACATTGCAAGCGATTGCT
GAATGTCAAAAAGCTGGCGGTACATGTGCATTCATCGATGCCGAGCACGCGCTTGATCCTCAATATGCCCGTAAACTCGG
TGTAGATATTGATAACCTGCTGGTTTCTCAACCAGACAACGGTGAACAGGCACTTGAAATCGCTGACATGCTGGTGCGTT
CCGGTGCGATTGACCTGATCGTAGTCGACTCTGTTGCTGCATTGACGCCTCGTGCCGAGATTGAAGGTGAAATGGGTGAC
TCACATATGGGTCTGCAAGCACGTTTGATGAGCCAGGCACTGCGTAAAATTACCGGTAATGCCAAGCGTTCAAACTGTAT
GGTGATCTTCATTAACCAGATCCGTATGAAGATTGGTGTAATGTTCGGTAGCCCGGAAACAACTACTGGTGGTAATGCAC
TTAAATTCTACGCTTCGGTACGTCTGGATATTCGCCGTATCGGTCAGGTAAAAGAAGGCGATGAGATTGTAGGTTCTGAA
ACCAAAGTCAAAGTTGTGAAAAATAAAATGGCACCTCCATTCAGAGAAGCTCTGTTCCAGATTCTGTATGGTAAAGGTGT
TAACCATCTTGGTGAACTGATTGACCTTGCAGTACAGCAAGAAATTGTTCAGAAAGCGGGTGCATGGTATTCATATCAAG
GCGACAAGATTGGCCAAGGTAAGAACAATACCATCCGTTATCTGGAAGAACACAAAGAGCTGGCGGATACTATTGAAAAA
CTGATCCGTGAGCAACTGCTTACTACAAGCAAAGTAGTCGAAGATAAAGACGAAGAAGAACCAGCAGACTTTCTGGATGC
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

89.971

100

0.905
  recA Acinetobacter baylyi ADP1

89.143

100

0.899
  recA Pseudomonas stutzeri DSM 10701

76.061

95.101

0.723
  recA Vibrio cholerae strain A1552

74.312

94.236

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

94.236

0.7
  recA Glaesserella parasuis strain SC1401

70.393

95.389

0.671
  recA Ralstonia pseudosolanacearum GMI1000

72.93

90.49

0.66
  recA Neisseria gonorrhoeae MS11

64.162

99.712

0.64
  recA Neisseria gonorrhoeae MS11

64.162

99.712

0.64
  recA Neisseria gonorrhoeae strain FA1090

64.162

99.712

0.64
  recA Helicobacter pylori strain NCTC11637

63.717

97.695

0.622
  recA Helicobacter pylori 26695

63.422

97.695

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.941

97.983

0.617
  recA Streptococcus pneumoniae TIGR4

60.756

99.135

0.602
  recA Streptococcus pneumoniae Rx1

60.756

99.135

0.602
  recA Streptococcus pneumoniae D39

60.756

99.135

0.602
  recA Streptococcus pneumoniae R6

60.756

99.135

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

95.389

0.599
  recA Streptococcus mitis NCTC 12261

60.117

98.271

0.591
  recA Streptococcus mitis SK321

59.824

98.271

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

62.733

92.795

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.963

93.948

0.582
  recA Streptococcus mutans UA159

61.28

94.524

0.579
  recA Streptococcus pyogenes NZ131

61.538

93.66

0.576
  recA Lactococcus lactis subsp. cremoris KW2

58.383

96.254

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

92.507

0.545

Multiple sequence alignment