Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C3F34_RS17440 Genome accession   NZ_CP026412
Coordinates   3651538..3652584 (+) Length   348 a.a.
NCBI ID   WP_016167729.1    Uniprot ID   R9AV28
Organism   Acinetobacter sp. ACNIH2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3646538..3657584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS17420 (C3F34_17415) - 3648611..3649345 (-) 735 WP_104442205.1 phosphoglycerate mutase family protein -
  C3F34_RS17425 (C3F34_17420) - 3649398..3650255 (-) 858 WP_044740006.1 3'(2'),5'-bisphosphate nucleotidase CysQ family protein -
  C3F34_RS17430 (C3F34_17425) - 3650270..3650956 (+) 687 WP_044740007.1 HAD-IA family hydrolase -
  C3F34_RS17435 (C3F34_17430) - 3650949..3651389 (+) 441 WP_016167730.1 RNA-binding S4 domain-containing protein -
  C3F34_RS17440 (C3F34_17435) recA 3651538..3652584 (+) 1047 WP_016167729.1 recombinase RecA Machinery gene
  C3F34_RS17445 (C3F34_17440) - 3652661..3653254 (+) 594 WP_044740009.1 regulatory protein RecX -
  C3F34_RS17455 (C3F34_17450) - 3653672..3654550 (+) 879 WP_044740051.1 YbgF trimerization domain-containing protein -
  C3F34_RS17460 (C3F34_17455) lpxA 3654589..3655377 (-) 789 WP_016167726.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  C3F34_RS17465 (C3F34_17460) fabZ 3655385..3655861 (-) 477 WP_104442206.1 3-hydroxyacyl-ACP dehydratase FabZ -
  C3F34_RS17470 (C3F34_17465) lpxD 3655869..3656939 (-) 1071 WP_044740010.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  C3F34_RS17475 (C3F34_17470) - 3656943..3657437 (-) 495 WP_104442207.1 OmpH family outer membrane protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37720.14 Da        Isoelectric Point: 4.9373

>NTDB_id=269203 C3F34_RS17440 WP_016167729.1 3651538..3652584(+) (recA) [Acinetobacter sp. ACNIH2]
MDENKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIIGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNQLGELVDLAVQQDIIQKAGAWYSYQGNKIGQGKNNVIRHLEENPQLAQEVER
IIRDQLLTTGGVVEDKEEEDESDLLLDA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=269203 C3F34_RS17440 WP_016167729.1 3651538..3652584(+) (recA) [Acinetobacter sp. ACNIH2]
ATGGATGAGAATAAAAGTAAGGCACTCAATGCTGCCCTAAGCCAAATTGAAAAACAGTTTGGTAAAAATACAGTTATGCG
CCTTGGTGATAATACAGTGCAAGCTGTTGAAGCCGTTTCAACAGGATCATTGACACTCGATATCGCACTAGGTATTGGTG
GCTTACCAAAGGGTCGTATTGTTGAAATTTACGGTCCAGAATCTTCAGGTAAAACCACCATGACATTGCAAGCAATTGCA
CAATGTCAAAAAGCAGGTGGTACATGTGCTTTTATCGATGCTGAACATGCACTTGATCCACAATATGCTCGCAAGCTTGG
TGTTGATATTGACAACCTCTTAGTTTCTCAACCAGACCATGGTGAGCAAGCACTCGAAATTGCAGACATGCTAGTACGTT
CTGGTGCAATTGACTTAATCGTAGTCGACTCTGTTGCAGCACTTACACCACGCGCTGAAATCGAAGGTGAAATGGGCGAT
TCACACATGGGGCTACAAGCGCGCTTAATGAGCCAAGCCTTACGTAAAATTACAGGTAATGCCAAACGTTCGAACTGTAT
GGTGATCTTCATTAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAGTCCTGAAACGACAACTGGTGGTAACGCAT
TAAAATTCTATGCTTCTGTTCGCCTTGACATTCGCCGTGTTGGCCAAGTTAAAGAAGGTGACGAAATTATAGGTTCAGAA
ACCAAAGTTAAAGTAGTTAAAAATAAAATGGCGCCCCCATTTAAAGAAGCTCTTTTCCAGATTCTTTATGGTAAGGGCGT
TAACCAACTAGGTGAATTGGTTGATCTTGCTGTTCAACAAGACATCATTCAAAAAGCAGGTGCTTGGTATTCTTATCAAG
GGAACAAAATTGGTCAAGGTAAAAACAATGTCATTCGTCACCTTGAAGAAAATCCACAATTGGCGCAAGAAGTGGAACGC
ATTATCCGTGACCAATTATTAACAACGGGTGGTGTTGTAGAAGACAAAGAAGAAGAGGATGAATCTGACCTCTTGCTCGA
TGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R9AV28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

91.714

100

0.922
  recA Acinetobacter baylyi ADP1

91.643

99.713

0.914
  recA Pseudomonas stutzeri DSM 10701

75.38

94.54

0.713
  recA Glaesserella parasuis strain SC1401

69.275

99.138

0.687
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.783

93.966

0.684
  recA Vibrio cholerae strain A1552

72.783

93.966

0.684
  recA Ralstonia pseudosolanacearum GMI1000

69.725

93.966

0.655
  recA Neisseria gonorrhoeae MS11

68.519

93.103

0.638
  recA Neisseria gonorrhoeae MS11

68.519

93.103

0.638
  recA Neisseria gonorrhoeae strain FA1090

68.519

93.103

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.115

0.612
  recA Streptococcus mutans UA159

61.449

99.138

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

98.276

0.609
  recA Helicobacter pylori strain NCTC11637

63.303

93.966

0.595
  recA Streptococcus pneumoniae Rx1

60.174

98.851

0.595
  recA Streptococcus pneumoniae TIGR4

60.174

98.851

0.595
  recA Streptococcus pneumoniae R6

60.174

98.851

0.595
  recA Streptococcus pneumoniae D39

60.174

98.851

0.595
  recA Streptococcus mitis NCTC 12261

60.411

97.989

0.592
  recA Helicobacter pylori 26695

62.997

93.966

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.19

93.678

0.592
  recA Streptococcus pyogenes NZ131

63.077

93.391

0.589
  recA Streptococcus mitis SK321

61.963

93.678

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

60.423

95.115

0.575
  recA Lactococcus lactis subsp. cremoris KW2

57.864

96.839

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

92.241

0.555

Multiple sequence alignment