Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C3F35_RS16685 Genome accession   NZ_CP026387
Coordinates   3431674..3432732 (+) Length   352 a.a.
NCBI ID   WP_032613584.1    Uniprot ID   A0A2C5TFG2
Organism   Leclercia sp. LSNIH3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3426674..3437732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F35_RS16655 (C3F35_16660) norR 3426765..3428279 (+) 1515 WP_103792546.1 nitric oxide reductase transcriptional regulator NorR -
  C3F35_RS16660 (C3F35_16665) gutQ 3428276..3429241 (-) 966 WP_103792545.1 arabinose-5-phosphate isomerase GutQ -
  C3F35_RS16665 (C3F35_16670) srlR 3429234..3429449 (-) 216 Protein_3131 glucitol operon DNA-binding transcriptional repressor SrlR -
  C3F35_RS27250 (C3F35_16675) - 3429573..3429662 (-) 90 Protein_3132 transcriptional regulator GutM -
  C3F35_RS16675 (C3F35_16680) mltB 3429827..3430918 (+) 1092 WP_175637265.1 lytic murein transglycosylase B -
  C3F35_RS16680 (C3F35_16685) pncC 3431089..3431586 (+) 498 WP_032613587.1 nicotinamide-nucleotide amidase -
  C3F35_RS16685 (C3F35_16690) recA 3431674..3432732 (+) 1059 WP_032613584.1 recombinase RecA Machinery gene
  C3F35_RS16690 (C3F35_16695) recX 3432802..3433302 (+) 501 WP_032613582.1 recombination regulator RecX -
  C3F35_RS16695 (C3F35_16700) alaS 3433434..3436061 (+) 2628 WP_032613580.1 alanine--tRNA ligase -
  C3F35_RS16700 (C3F35_16705) csrA 3436303..3436488 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37898.31 Da        Isoelectric Point: 4.8171

>NTDB_id=269082 C3F35_RS16685 WP_032613584.1 3431674..3432732(+) (recA) [Leclercia sp. LSNIH3]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKDGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPEAAKEI
EKKVRELLLSNQDSKPQFAVDGEGVEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=269082 C3F35_RS16685 WP_032613584.1 3431674..3432732(+) (recA) [Leclercia sp. LSNIH3]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGTTCCAT
CATGCGCCTGGGTGAAGATCGTTCCATGGATGTAGAAACTATCTCCACCGGTTCGCTTTCGCTGGATATTGCACTGGGTG
CTGGCGGCCTGCCTATGGGTCGTATCGTAGAGATCTACGGGCCAGAATCCTCCGGTAAAACCACCCTGACGTTACAGGTC
GTGGCTGCTGCACAGCGCGAGGGCAAAACTTGTGCCTTTATCGATGCTGAGCATGCGCTGGATCCGGTCTACGCACGTAA
ACTGGGTGTTGATATCGACAACCTGCTCTGCTCCCAGCCGGATACCGGTGAGCAGGCACTGGAAATCTGTGACGCACTGG
CGCGCTCTGGCGCAGTAGACGTAATTATCGTCGACTCCGTTGCAGCCCTGACGCCAAAAGCAGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTGCGTCTGGATATCCGCCGTATCGGTGCCGTGAAAGACGGTGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAGATTGCTGCGCCGTTTAAACAGGCTGAGTTCCAGATCCTCTACGGTGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAGAAAGCGGGTGCCTGGTATAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGAAGCAGCAAAAGAGATC
GAGAAGAAGGTGCGTGAGCTTCTGCTCAGCAACCAGGATTCCAAACCGCAGTTCGCTGTTGATGGCGAAGGCGTTGAAGA
AACCAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C5TFG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

94.034

0.793
  recA Vibrio cholerae strain A1552

84.29

94.034

0.793
  recA Pseudomonas stutzeri DSM 10701

73.952

94.886

0.702
  recA Acinetobacter baylyi ADP1

70.893

98.58

0.699
  recA Acinetobacter baumannii D1279779

73.78

93.182

0.687
  recA Glaesserella parasuis strain SC1401

72.424

93.75

0.679
  recA Neisseria gonorrhoeae MS11

69.939

92.614

0.648
  recA Neisseria gonorrhoeae MS11

69.939

92.614

0.648
  recA Neisseria gonorrhoeae strain FA1090

69.939

92.614

0.648
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.352

0.628
  recA Streptococcus mitis SK321

60

99.432

0.597
  recA Streptococcus mitis NCTC 12261

60

99.432

0.597
  recA Helicobacter pylori strain NCTC11637

61.128

95.739

0.585
  recA Helicobacter pylori 26695

60.831

95.739

0.582
  recA Streptococcus pneumoniae D39

63.158

91.761

0.58
  recA Streptococcus pneumoniae TIGR4

63.158

91.761

0.58
  recA Streptococcus pneumoniae Rx1

63.158

91.761

0.58
  recA Streptococcus pneumoniae R6

63.158

91.761

0.58
  recA Lactococcus lactis subsp. cremoris KW2

61.846

92.33

0.571
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.06

94.602

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

92.045

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56

Multiple sequence alignment