Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C3E99_RS10070 Genome accession   NZ_CP026381
Coordinates   2193971..2195050 (-) Length   359 a.a.
NCBI ID   WP_104959756.1    Uniprot ID   -
Organism   Sphingopyxis sp. MG     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2188971..2200050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3E99_RS10045 (C3E99_10045) - 2189288..2189680 (+) 393 WP_076076043.1 OB-fold domain-containing protein -
  C3E99_RS10050 (C3E99_10050) - 2189680..2190831 (+) 1152 WP_076076046.1 thiolase family protein -
  C3E99_RS10055 (C3E99_10055) - 2190878..2191621 (+) 744 WP_076076048.1 Asp/Glu racemase -
  C3E99_RS10060 (C3E99_10060) - 2191678..2192868 (+) 1191 WP_076076050.1 PhoPQ-activated protein PqaA family protein -
  C3E99_RS10065 (C3E99_10065) - 2193038..2193730 (+) 693 WP_083675123.1 TetR/AcrR family transcriptional regulator -
  C3E99_RS10070 (C3E99_10070) recA 2193971..2195050 (-) 1080 WP_104959756.1 recombinase RecA Machinery gene
  C3E99_RS10075 (C3E99_10075) - 2195167..2195520 (-) 354 WP_076077969.1 response regulator -
  C3E99_RS10080 (C3E99_10080) - 2195510..2197942 (-) 2433 WP_104960359.1 response regulator -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38509.02 Da        Isoelectric Point: 4.9590

>NTDB_id=269015 C3E99_RS10070 WP_104959756.1 2193971..2195050(-) (recA) [Sphingopyxis sp. MG]
MAGQLSLVESGKSVNGPDRQKALDAALAQIDRAFGKGSVMKLGSKEAMQVEAISTGSLGLDIALGVGGLPRGRVIEIYGP
ESSGKTTLALHCIAEAQKMGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRR
TGQIKDRDEIVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQGRENAKN
FLSENPELMQRLESAIRGRTDAVAEEMMTGPDDGEDDDL

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=269015 C3E99_RS10070 WP_104959756.1 2193971..2195050(-) (recA) [Sphingopyxis sp. MG]
ATGGCCGGACAATTGTCACTCGTCGAATCGGGGAAATCAGTGAACGGACCAGACAGACAGAAGGCGCTCGACGCCGCATT
GGCGCAGATCGACCGCGCCTTCGGCAAGGGCTCGGTGATGAAGCTCGGCTCGAAGGAGGCGATGCAGGTCGAGGCGATCT
CGACCGGTTCGCTCGGGCTCGACATCGCGCTGGGGGTCGGCGGCCTGCCGCGCGGGCGCGTCATCGAAATCTATGGCCCC
GAAAGCTCGGGCAAGACTACGCTTGCGCTGCATTGCATCGCTGAGGCGCAGAAGATGGGCGGCACCGCGGCCTTCGTCGA
CGCCGAACATGCGCTCGATCCCGTTTATGCGAAGAAGCTTGGCGTCGACATCGACGAACTGATCGTGTCGCAGCCCGACA
CCGGTGAGCAAGCGCTCGAGATCGTCGACACGCTGGTGCGTTCGAACGCGATCGATGTGCTCGTCGTCGATTCGGTCGCG
GCGCTCGTTCCGCGCGCAGAGATTGAGGGCGAGATGGGCGACAGTCATGTCGGCCTGCAGGCACGGCTGATGTCGCAGAG
CCTGCGCAAGCTCACCGGGTCGATCAGCCGTTCGCGCTGCATGGTGATCTTCATTAACCAGCTGCGCATGAAGATCGGCG
TGATGTACGGGAATCCCGAGACGACGACCGGCGGCAACGCACTCAAATTCTATGCCTCGGTCCGCCTCGACATTCGCCGC
ACCGGGCAGATCAAGGACCGCGACGAGATCGTCGGCAACACGACGCGTGTCAAGGTGGTCAAGAACAAGGTCGCGCCGCC
GTTCAAGCAGGTCGAGTTTGACATCATGTACGGTCAGGGCATTTCGAAGATCGGCGAGATCCTCGACCTCGGCGTCAAGG
CCGGGCTGGTCGAGAAATCGGGCGCCTGGTTCAGCTATGATTCGATCCGAATCGGGCAGGGCCGCGAGAATGCGAAGAAT
TTCCTGAGCGAGAATCCCGAGCTGATGCAGCGGCTCGAAAGCGCGATCCGCGGTCGCACCGATGCCGTGGCGGAAGAGAT
GATGACCGGTCCCGACGACGGGGAAGACGACGATCTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

68.155

93.593

0.638
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.155

93.593

0.638
  recA Pseudomonas stutzeri DSM 10701

70.807

89.694

0.635
  recA Glaesserella parasuis strain SC1401

68.712

90.808

0.624
  recA Neisseria gonorrhoeae strain FA1090

69.159

89.415

0.618
  recA Neisseria gonorrhoeae MS11

69.159

89.415

0.618
  recA Neisseria gonorrhoeae MS11

69.159

89.415

0.618
  recA Acinetobacter baumannii D1279779

64.912

95.265

0.618
  recA Acinetobacter baylyi ADP1

64.706

94.708

0.613
  recA Ralstonia pseudosolanacearum GMI1000

70.779

85.794

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.559

92.201

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.717

94.429

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

67.188

89.136

0.599
  recA Helicobacter pylori strain NCTC11637

62.908

93.872

0.591
  recA Helicobacter pylori 26695

62.611

93.872

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

61.947

94.429

0.585
  recA Streptococcus pyogenes NZ131

59.824

94.986

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.059

94.15

0.565
  recA Streptococcus pneumoniae R6

61.585

91.365

0.563
  recA Streptococcus pneumoniae TIGR4

61.585

91.365

0.563
  recA Streptococcus pneumoniae Rx1

61.585

91.365

0.563
  recA Streptococcus pneumoniae D39

61.585

91.365

0.563
  recA Streptococcus mitis NCTC 12261

61.656

90.808

0.56
  recA Streptococcus mitis SK321

61.656

90.808

0.56
  recA Streptococcus mutans UA159

58.651

94.986

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.202

90.808

0.538

Multiple sequence alignment