Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C2E16_RS16535 Genome accession   NZ_CP026378
Coordinates   3459020..3460090 (-) Length   356 a.a.
NCBI ID   WP_038624523.1    Uniprot ID   -
Organism   Mixta calida strain DSM 22759     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3454020..3465090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E16_RS16520 (C2E16_16515) csrA 3455188..3455367 (-) 180 WP_038624529.1 carbon storage regulator CsrA -
  C2E16_RS16525 (C2E16_16520) alaS 3455614..3458241 (-) 2628 WP_038624527.1 alanine--tRNA ligase -
  C2E16_RS16530 (C2E16_16525) - 3458379..3458888 (-) 510 WP_038624525.1 regulatory protein RecX -
  C2E16_RS16535 (C2E16_16530) recA 3459020..3460090 (-) 1071 WP_038624523.1 recombinase RecA Machinery gene
  C2E16_RS16540 (C2E16_16535) pncC 3460185..3460688 (-) 504 WP_244555287.1 nicotinamide-nucleotide amidase -
  C2E16_RS16545 (C2E16_16540) - 3461038..3461925 (+) 888 WP_084970329.1 dihydrodipicolinate synthase family protein -
  C2E16_RS16550 (C2E16_16545) - 3461996..3462337 (-) 342 WP_038624517.1 zinc ribbon domain-containing protein YjdM -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38235.59 Da        Isoelectric Point: 4.8760

>NTDB_id=269005 C2E16_RS16535 WP_038624523.1 3459020..3460090(-) (recA) [Mixta calida strain DSM 22759]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINVYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANASNYLKENSAIANEI
EQKLRDMLLNNPTEEGKANVSAEDYEDAASETNEDF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=269005 C2E16_RS16535 WP_038624523.1 3459020..3460090(-) (recA) [Mixta calida strain DSM 22759]
ATGGCTATTGACGAAAACAAGCAAAAGGCTCTGGCTGCAGCGCTGGGCCAAATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCTCAATGGATGTGGAAACCATCTCGACCGGTTCACTTTCGCTTGATATCGCCCTTGGCG
CTGGCGGCCTGCCGATGGGCCGTATTGTTGAGATTTACGGGCCAGAGTCTTCGGGTAAAACCACGCTGACTCTGCAGGTG
ATCGCCGCCGCGCAGCGTAAAGGCAAAACCTGTGCCTTTATCGACGCTGAACATGCGCTCGATCCGGTTTACGCCAAGAA
ACTGGGCGTTGATATCGATAACCTGCTCTGTTCTCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGCTCGGGCGCGGTTGACGTGATCATCGTCGACTCCGTTGCGGCGTTGACGCCGAAAGCGGAAATCGAAGGTGAGATC
GGTGACTCCCATATGGGTCTGGCCGCGCGTATGATGAGCCAGGCGATGCGTAAACTGGCGGGTAACCTGAAGCAGTCCAA
TACGCTGCTGATCTTTATCAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGTTGAAGTTCTACGCATCTGTGCGTCTTGATATCCGCCGCATTGGCGCGATTAAAGAGGGCGACAACGTCGTCGGC
AGCGAAACCCGCGTTAAAGTGGTGAAAAACAAAATCGCCGCGCCGTTTAAACAGGCGGAATTCCAGATCATGTATGGTGA
AGGGATTAACGTCTATGGCGAACTGGTCGATCTGGGCGTGAAGCACAAGCTGATCGAAAAAGCAGGTGCCTGGTATAGCT
ACAATGGCGATAAAATCGGCCAGGGTAAAGCGAACGCCAGCAACTACCTGAAAGAGAACAGCGCCATCGCTAACGAGATT
GAACAGAAGCTGCGCGATATGCTGCTGAACAACCCGACAGAAGAAGGCAAAGCGAATGTTTCGGCGGAAGATTATGAAGA
CGCCGCCAGCGAAACGAACGAAGACTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

86.28

92.135

0.795
  recA Vibrio cholerae strain A1552

86.28

92.135

0.795
  recA Pseudomonas stutzeri DSM 10701

73.699

97.191

0.716
  recA Acinetobacter baumannii D1279779

70.571

98.315

0.694
  recA Glaesserella parasuis strain SC1401

69.231

98.596

0.683
  recA Acinetobacter baylyi ADP1

70.435

96.91

0.683
  recA Ralstonia pseudosolanacearum GMI1000

67.576

92.697

0.626
  recA Neisseria gonorrhoeae MS11

68.519

91.011

0.624
  recA Neisseria gonorrhoeae MS11

68.519

91.011

0.624
  recA Neisseria gonorrhoeae strain FA1090

68.519

91.011

0.624
  recA Streptococcus pneumoniae Rx1

58.924

99.157

0.584
  recA Streptococcus pneumoniae TIGR4

58.924

99.157

0.584
  recA Streptococcus pneumoniae R6

58.924

99.157

0.584
  recA Streptococcus pneumoniae D39

58.924

99.157

0.584
  recA Helicobacter pylori strain NCTC11637

62.048

93.258

0.579
  recA Streptococcus mutans UA159

58.689

98.596

0.579
  recA Helicobacter pylori 26695

61.747

93.258

0.576
  recA Lactococcus lactis subsp. cremoris KW2

62.848

90.73

0.57
  recA Streptococcus mitis NCTC 12261

62.539

90.73

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.169

0.565
  recA Streptococcus mitis SK321

62.229

90.73

0.565
  recA Streptococcus pyogenes NZ131

61.846

91.292

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.162

91.854

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.292

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.258

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.816

91.573

0.548

Multiple sequence alignment