Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C2E15_RS16700 Genome accession   NZ_CP026377
Coordinates   3561776..3562846 (-) Length   356 a.a.
NCBI ID   WP_104958361.1    Uniprot ID   -
Organism   Mixta gaviniae strain DSM 22758     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3556776..3567846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E15_RS16685 (C2E15_16680) csrA 3557946..3558125 (-) 180 WP_038624529.1 carbon storage regulator CsrA -
  C2E15_RS16690 (C2E15_16685) alaS 3558373..3561000 (-) 2628 WP_104958359.1 alanine--tRNA ligase -
  C2E15_RS16695 (C2E15_16690) - 3561138..3561647 (-) 510 WP_104958360.1 regulatory protein RecX -
  C2E15_RS16700 (C2E15_16695) recA 3561776..3562846 (-) 1071 WP_104958361.1 recombinase RecA Machinery gene
  C2E15_RS16705 (C2E15_16700) pncC 3562941..3563444 (-) 504 WP_245912299.1 nicotinamide-nucleotide amidase -
  C2E15_RS16710 (C2E15_16705) - 3563792..3564679 (+) 888 WP_104958363.1 dihydrodipicolinate synthase family protein -
  C2E15_RS16715 (C2E15_16710) - 3564713..3565054 (-) 342 WP_104958364.1 zinc ribbon domain-containing protein YjdM -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38193.56 Da        Isoelectric Point: 5.0576

>NTDB_id=268983 C2E15_RS16700 WP_104958361.1 3561776..3562846(-) (recA) [Mixta gaviniae strain DSM 22758]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINVYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANASNYLKENSAIANEI
EHKLREMLLNNPAEEGKADFSAADHEDAASETNEDF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=268983 C2E15_RS16700 WP_104958361.1 3561776..3562846(-) (recA) [Mixta gaviniae strain DSM 22758]
ATGGCTATTGACGAAAACAAGCAAAAGGCTCTGGCTGCAGCGCTGGGCCAAATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCTCAATGGATGTGGAAACCATCTCGACCGGTTCACTTTCGCTTGATATCGCCCTTGGCG
CTGGCGGCCTGCCGATGGGCCGTATTGTTGAGATTTACGGTCCGGAATCTTCCGGTAAAACCACGCTGACCCTGCAGGTT
ATCGCCGCAGCGCAGCGTAAAGGCAAAACCTGCGCCTTTATCGACGCCGAGCATGCGCTGGATCCGGTCTACGCCAAGAA
ACTGGGCGTTGATATCGATAACCTGCTCTGTTCTCAGCCCGATACCGGCGAACAGGCGCTGGAAATCTGTGATGCGCTGG
CGCGCTCCGGCGCCGTTGACGTTATCATCGTCGACTCCGTCGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCCCACATGGGTCTGGCCGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAGTTCTATGCGTCCGTCCGTCTTGATATCCGCCGTATCGGCGCGATCAAAGAGGGCGATAACGTGGTCGGC
AGCGAGACCCGCGTGAAAGTGGTGAAAAACAAAATCGCCGCGCCGTTCAAACAGGCGGAATTCCAGATCATGTACGGTGA
AGGGATTAACGTCTACGGCGAGCTGGTCGATCTGGGCGTGAAGCACAAGCTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ACAATGGCGATAAAATCGGCCAGGGTAAAGCGAATGCCAGCAACTACCTGAAAGAGAACAGCGCCATCGCCAATGAGATC
GAGCATAAGCTGCGCGAGATGCTGCTGAACAACCCGGCGGAAGAGGGCAAGGCGGATTTCTCTGCGGCCGATCATGAAGA
CGCCGCCAGCGAAACCAACGAAGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

86.585

92.135

0.798
  recA Vibrio cholerae O1 biovar El Tor strain E7946

86.585

92.135

0.798
  recA Pseudomonas stutzeri DSM 10701

73.41

97.191

0.713
  recA Acinetobacter baylyi ADP1

69.972

99.157

0.694
  recA Acinetobacter baumannii D1279779

74.312

91.854

0.683
  recA Glaesserella parasuis strain SC1401

68.946

98.596

0.68
  recA Neisseria gonorrhoeae MS11

68.098

91.573

0.624
  recA Neisseria gonorrhoeae MS11

68.098

91.573

0.624
  recA Neisseria gonorrhoeae strain FA1090

68.098

91.573

0.624
  recA Ralstonia pseudosolanacearum GMI1000

69.841

88.483

0.618
  recA Helicobacter pylori strain NCTC11637

62.349

93.258

0.581
  recA Helicobacter pylori 26695

62.048

93.258

0.579
  recA Lactococcus lactis subsp. cremoris KW2

63.158

90.73

0.573
  recA Streptococcus mitis NCTC 12261

62.848

90.73

0.57
  recA Streptococcus mitis SK321

62.539

90.73

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.169

0.567
  recA Streptococcus pneumoniae R6

62.229

90.73

0.565
  recA Streptococcus pneumoniae Rx1

62.229

90.73

0.565
  recA Streptococcus pneumoniae D39

62.229

90.73

0.565
  recA Streptococcus pneumoniae TIGR4

62.229

90.73

0.565
  recA Streptococcus mutans UA159

61.846

91.292

0.565
  recA Streptococcus pyogenes NZ131

61.846

91.292

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.696

89.607

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.292

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.258

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

90.169

0.539

Multiple sequence alignment