Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C2U39_RS19695 Genome accession   NZ_CP026222
Coordinates   4194765..4195829 (-) Length   354 a.a.
NCBI ID   WP_010672819.1    Uniprot ID   A0A2L0TPN1
Organism   Aeromonas sp. ASNIH3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4189765..4200829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U39_RS19675 (C2U39_19680) csrA 4189775..4189963 (-) 189 WP_005315760.1 carbon storage regulator CsrA -
  C2U39_RS19680 (C2U39_19685) - 4190057..4191304 (-) 1248 WP_010672822.1 aspartate kinase -
  C2U39_RS19685 (C2U39_19690) alaS 4191321..4193945 (-) 2625 WP_010672821.1 alanine--tRNA ligase -
  C2U39_RS19690 (C2U39_19695) - 4194217..4194723 (-) 507 WP_103260870.1 regulatory protein RecX -
  C2U39_RS19695 (C2U39_19700) recA 4194765..4195829 (-) 1065 WP_010672819.1 recombinase RecA Machinery gene
  C2U39_RS19700 (C2U39_19705) pncC 4195910..4196401 (-) 492 WP_029313644.1 nicotinamide-nucleotide amidase -
  C2U39_RS19705 (C2U39_19710) - 4196601..4197008 (+) 408 WP_103260871.1 Spy/CpxP family protein refolding chaperone -
  C2U39_RS19710 (C2U39_19715) mutS 4197272..4199842 (+) 2571 WP_103260872.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38070.68 Da        Isoelectric Point: 4.8988

>NTDB_id=267900 C2U39_RS19695 WP_010672819.1 4194765..4195829(-) (recA) [Aeromonas sp. ASNIH3]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFSENKALAAEVEV
KLRELLLSGAAPVEEKATAAEYDEFEAENEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=267900 C2U39_RS19695 WP_010672819.1 4194765..4195829(-) (recA) [Aeromonas sp. ASNIH3]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGCCAGATCGAAAAGCAGTTTGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCCACCGGCTCTCTCTCTCTGGACGTGGCGCTGGGGATCGGTG
GTCTGCCGTGCGGTCGTATCGTCGAGATCTACGGTCCGGAATCGTCCGGTAAAACTACGCTGACCTTGCAGGTGATCGCC
GAAGCCCAGAAGAAGGGCAAAACCTGTGCCTTCGTCGATGCGGAGCACGCACTGGATCCTATCTATGCCGCCAAGCTGGG
CGTCAACGTCGACGACCTGCTCATCTCCCAGCCGGATACCGGTGAACAGGCACTGGAGATTTGCGACATGCTGGTGCGCT
CCAATGCCGTCGACGTCATCATCGTCGACTCCGTGGCGGCCCTGACCCCGAAAGCGGAAATCGAAGGCGAAATGGGTGAC
TCCCACGTCGGCCTGCAGGCCCGACTGATGTCCCAGGCGCTGCGTAAATTGACCGCCAACATCAAGAACGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATTGGCGTCATGTTCGGCAGCCCGGAGACCACCACCGGTGGTAACGCTC
TGAAGTTTTACGCCTCCGTGCGCCTGGACATCCGTCGTACCGGCGCCATCAAGGAAGGGGACGAGGTGGTCGGCAACGAA
ACCCGCGTCAAGGTCGTCAAGAACAAGGTGGCGCCACCCTTCAAGCAGGCTGAGTTCCAGATCTTCTATGGTGCCGGTAT
CTCCAAGGAGGGCGAGCTGGTGGATCTCGGCGTCAAGCACAAGCTGATCGACAAGGCGGGCGCCTGGTACAGCTACAACG
GCGAGAAGATCGGCCAGGGCAAAGCCAACGTGATGAAGCTCTTCTCCGAAAACAAGGCACTGGCTGCCGAGGTGGAAGTG
AAGCTGCGCGAGCTGCTGCTCTCTGGCGCCGCGCCGGTGGAAGAGAAGGCCACGGCTGCCGAATACGACGAGTTTGAAGC
TGAAAACGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0TPN1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.011

98.305

0.757
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.637

99.718

0.754
  recA Vibrio cholerae strain A1552

75.637

99.718

0.754
  recA Acinetobacter baylyi ADP1

70.977

98.305

0.698
  recA Acinetobacter baumannii D1279779

72.647

96.045

0.698
  recA Glaesserella parasuis strain SC1401

69.886

99.435

0.695
  recA Neisseria gonorrhoeae MS11

68.555

99.718

0.684
  recA Neisseria gonorrhoeae MS11

68.555

99.718

0.684
  recA Neisseria gonorrhoeae strain FA1090

68.555

99.718

0.684
  recA Ralstonia pseudosolanacearum GMI1000

72.948

92.938

0.678
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

93.785

0.605
  recA Helicobacter pylori strain NCTC11637

64.308

91.808

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

90.113

0.59
  recA Helicobacter pylori 26695

63.692

91.808

0.585
  recA Streptococcus pneumoniae D39

58.739

98.588

0.579
  recA Streptococcus pneumoniae Rx1

58.739

98.588

0.579
  recA Streptococcus pneumoniae TIGR4

58.739

98.588

0.579
  recA Streptococcus pneumoniae R6

58.739

98.588

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

62.069

90.113

0.559
  recA Streptococcus mitis SK321

61.3

91.243

0.559
  recA Streptococcus mitis NCTC 12261

60.991

91.243

0.556
  recA Streptococcus pyogenes NZ131

60.681

91.243

0.554
  recA Streptococcus mutans UA159

60.372

91.243

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.146

92.655

0.548
  recA Lactococcus lactis subsp. cremoris KW2

58.204

91.243

0.531

Multiple sequence alignment