Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OEOE_RS06650 Genome accession   NC_008528
Coordinates   1293971..1295101 (-) Length   376 a.a.
NCBI ID   WP_011677691.1    Uniprot ID   Q04E78
Organism   Oenococcus oeni PSU-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1288971..1300101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEOE_RS06635 (OEOE_1379) - 1289630..1291477 (-) 1848 WP_011677690.1 ABC transporter ATP-binding protein -
  OEOE_RS06640 (OEOE_1380) - 1291470..1293221 (-) 1752 WP_002824051.1 ABC transporter ATP-binding protein -
  OEOE_RS06645 (OEOE_1381) - 1293267..1293920 (-) 654 WP_002820340.1 hemolysin III family protein -
  OEOE_RS06650 (OEOE_1382) recA 1293971..1295101 (-) 1131 WP_011677691.1 recombinase RecA Machinery gene
  OEOE_RS06655 (OEOE_1383) pgsA 1295218..1295778 (-) 561 WP_002820342.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OEOE_RS06660 (OEOE_1384) - 1295775..1296749 (-) 975 WP_002821751.1 RodZ domain-containing protein -
  OEOE_RS06665 (OEOE_1385) - 1296770..1298047 (-) 1278 WP_002820344.1 pitrilysin family protein -
  OEOE_RS06670 (OEOE_1386) - 1298037..1299290 (-) 1254 WP_011677692.1 insulinase family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40360.33 Da        Isoelectric Point: 4.7775

>NTDB_id=26604 OEOE_RS06650 WP_011677691.1 1293971..1295101(-) (recA) [Oenococcus oeni PSU-1]
MASGRKAALDAALKKIEKDFGKGSIMRLGENVHTQVDVISTGSLKLDIALGVGGYPKGRIIEVFGPESSGKTTVALHAAA
EVQKQGGTAAYIDAENSLDAKYAQALGVNVDDLLLSQPDTGEQGLEIADDLVNSGAIDLLVIDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGIMFGNPETTPGGRALKFYSTVRLEVRRSAQIKDGTNIVGNN
TKIKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDLAVDKDIINKSGAWYAYQGEKIGQGRVNAISWLDSPEHKKEHDEI
FTSVRDQYGIGEKKDSDEDPGDNKKSKDSASDPFDDPNYNPKSSDPGDDLSDDDIY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=26604 OEOE_RS06650 WP_011677691.1 1293971..1295101(-) (recA) [Oenococcus oeni PSU-1]
ATGGCTAGTGGAAGAAAAGCTGCACTCGATGCAGCATTAAAGAAAATTGAAAAAGATTTTGGTAAGGGATCGATTATGCG
TTTGGGTGAAAATGTTCATACACAGGTCGATGTTATTTCAACAGGTTCTTTAAAACTCGATATTGCTTTAGGGGTTGGTG
GCTATCCGAAAGGAAGAATCATTGAAGTGTTCGGACCGGAATCTTCAGGTAAAACAACTGTTGCTTTGCATGCGGCTGCT
GAAGTCCAAAAACAGGGCGGCACGGCGGCTTATATCGATGCCGAAAACTCTTTGGATGCGAAATACGCGCAAGCTCTTGG
CGTAAATGTTGACGATTTGCTGCTTAGCCAACCGGATACCGGAGAACAGGGCTTGGAAATCGCTGATGATTTGGTTAATT
CCGGGGCAATCGATCTATTGGTTATCGATTCGGTCGCGGCTTTGGTCCCACGCGCTGAAATCGAAGGAGAAATGGGCGAT
TCTCATGTTGGTTTACAGGCTCGTTTAATGAGCCAGGCACTTCGGAAACTTGCCGGTACACTGAATAGAACCGGTACAAT
TGCAATTTTTATTAACCAGATTCGTGAAAAAATAGGAATTATGTTTGGAAATCCAGAGACAACTCCGGGTGGCCGTGCTT
TGAAATTTTACTCGACTGTTAGACTTGAAGTGCGTCGATCTGCTCAAATTAAAGATGGCACGAATATTGTTGGAAATAAT
ACCAAAATTAAAGTTGTTAAAAACAAAGTTGCTCCTCCGTTTAAAGTTGCCGAAGTTGACATTATGTACGGAAAAGGTAT
TAGCCAAACCGGAGAATTAATTGATCTTGCGGTTGATAAAGACATTATCAATAAGTCTGGTGCTTGGTATGCCTACCAAG
GAGAGAAAATTGGTCAAGGCCGTGTTAACGCTATTTCTTGGCTAGACAGTCCGGAACACAAAAAGGAACATGACGAAATT
TTCACTTCTGTCCGCGATCAATATGGAATTGGTGAAAAGAAGGATTCAGATGAAGATCCTGGAGACAATAAAAAGAGTAA
AGACTCTGCCTCGGACCCTTTCGATGATCCTAACTACAATCCTAAGTCGAGTGATCCCGGCGATGATTTATCCGACGATG
ATATTTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q04E78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.276

88.564

0.676
  recA Streptococcus mitis NCTC 12261

66.667

94.149

0.628
  recA Streptococcus mutans UA159

66.384

94.149

0.625
  recA Streptococcus mitis SK321

66.384

94.149

0.625
  recA Streptococcus pneumoniae TIGR4

67.341

92.021

0.62
  recA Streptococcus pneumoniae Rx1

67.341

92.021

0.62
  recA Streptococcus pneumoniae D39

67.341

92.021

0.62
  recA Streptococcus pneumoniae R6

67.341

92.021

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

69.817

87.234

0.609
  recA Streptococcus pyogenes NZ131

68.788

87.766

0.604
  recA Lactococcus lactis subsp. cremoris KW2

67.879

87.766

0.596
  recA Acinetobacter baumannii D1279779

63.609

86.968

0.553
  recA Acinetobacter baylyi ADP1

62.691

86.968

0.545
  recA Ralstonia pseudosolanacearum GMI1000

64.127

83.777

0.537
  recA Vibrio cholerae strain A1552

62.813

85.106

0.535
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.813

85.106

0.535
  recA Neisseria gonorrhoeae strain FA1090

63.407

84.309

0.535
  recA Neisseria gonorrhoeae MS11

63.407

84.309

0.535
  recA Neisseria gonorrhoeae MS11

63.407

84.309

0.535
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.43

91.489

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

86.968

0.527
  recA Pseudomonas stutzeri DSM 10701

61.562

85.106

0.524
  recA Helicobacter pylori 26695

58.485

87.766

0.513
  recA Helicobacter pylori strain NCTC11637

58.485

87.766

0.513
  recA Glaesserella parasuis strain SC1401

62.136

82.181

0.511
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.875

84.84

0.508

Multiple sequence alignment