Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C2H91_RS01135 Genome accession   NZ_CP026030
Coordinates   299590..300636 (-) Length   348 a.a.
NCBI ID   WP_095252583.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK3_9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 294590..305636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS01115 (C2H91_01105) spoVS 295086..295346 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  C2H91_RS01120 (C2H91_01110) ymdB 295546..296340 (-) 795 WP_003245138.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  C2H91_RS01125 (C2H91_01115) rny 296409..297971 (-) 1563 WP_003221010.1 ribonuclease Y -
  C2H91_RS01130 (C2H91_01120) pbpX 298247..299422 (-) 1176 WP_095252582.1 serine hydrolase domain-containing protein -
  C2H91_RS01135 (C2H91_01125) recA 299590..300636 (-) 1047 WP_095252583.1 recombinase RecA Machinery gene
  C2H91_RS01140 (C2H91_01130) cinA 300809..302059 (-) 1251 WP_077670741.1 competence/damage-inducible protein A Machinery gene
  C2H91_RS01145 (C2H91_01135) pgsA 302077..302658 (-) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C2H91_RS01150 (C2H91_01140) rodZ 302708..303574 (-) 867 WP_014476837.1 cell shape determination protein RodZ -
  C2H91_RS01155 (C2H91_01145) - 303641..304432 (-) 792 WP_003220998.1 YmfK family protein -
  C2H91_RS01160 (C2H91_01150) ymfJ 304562..304819 (-) 258 WP_003245199.1 DUF3243 domain-containing protein -
  C2H91_RS01165 (C2H91_01155) efpI 304900..305628 (-) 729 WP_015483236.1 EF-P-5 aminopentanone reductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38085.24 Da        Isoelectric Point: 4.6772

>NTDB_id=265237 C2H91_RS01135 WP_095252583.1 299590..300636(-) (recA) [Bacillus subtilis strain PK3_9]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREYYGLDNNGVVQQQAEETQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=265237 C2H91_RS01135 WP_095252583.1 299590..300636(-) (recA) [Bacillus subtilis strain PK3_9]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTACCAAGCGGCTCCCTCGCTCTTGATACAGCACTGGGAATTGGCGGAT
ATCCTCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAA
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTCGGTGT
TAACATCGAGGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTCGTTGTCGACTCTGTAGCCGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCT
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCAGAAACAACTCCTGGCGGCCGTGCGTTGA
AATTCTACTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAATATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

99.713

100

0.997
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

93.966

0.704
  recA Streptococcus pneumoniae D39

66.477

100

0.672
  recA Streptococcus pneumoniae R6

66.477

100

0.672
  recA Streptococcus pneumoniae TIGR4

66.477

100

0.672
  recA Streptococcus pneumoniae Rx1

66.477

100

0.672
  recA Streptococcus mutans UA159

66.092

100

0.661
  recA Streptococcus mitis SK321

65.994

99.713

0.658
  recA Streptococcus mitis NCTC 12261

68.788

94.828

0.652
  recA Streptococcus pyogenes NZ131

67.683

94.253

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.584

99.425

0.632
  recA Neisseria gonorrhoeae MS11

63.584

99.425

0.632
  recA Neisseria gonorrhoeae MS11

63.584

99.425

0.632
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Helicobacter pylori 26695

63.081

98.851

0.624
  recA Helicobacter pylori strain NCTC11637

63.081

98.851

0.624
  recA Ralstonia pseudosolanacearum GMI1000

64.438

94.54

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

98.276

0.609
  recA Glaesserella parasuis strain SC1401

60.58

99.138

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.465

98.851

0.598
  recA Vibrio cholerae strain A1552

60.465

98.851

0.598
  recA Acinetobacter baumannii D1279779

61.243

97.126

0.595
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Acinetobacter baylyi ADP1

62.617

92.241

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

91.954

0.56

Multiple sequence alignment