Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CF003_RS17230 | Genome accession | NZ_CP025932 |
| Coordinates | 1471436..1472458 (-) | Length | 340 a.a. |
| NCBI ID | WP_004584116.1 | Uniprot ID | A0A0E2LLY6 |
| Organism | Porphyromonas gingivalis strain W83 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1473164..1509926 | 1471436..1472458 | flank | 706 |
Gene organization within MGE regions
Location: 1471436..1509926
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CF003_RS17230 (CF003_0881) | recA | 1471436..1472458 (-) | 1023 | WP_004584116.1 | recombinase RecA | Machinery gene |
| CF003_RS17235 (CF003_0880) | bcp | 1472479..1472934 (-) | 456 | WP_005874193.1 | thioredoxin-dependent thiol peroxidase | - |
| CF003_RS17240 | - | 1473203..1473474 (+) | 272 | Protein_1227 | conjugative transposon protein TraJ | - |
| CF003_RS17245 (CF003_0877) | - | 1473822..1474733 (+) | 912 | WP_005874194.1 | hypothetical protein | - |
| CF003_RS17250 (CF003_0876) | mnmE | 1474897..1476321 (+) | 1425 | WP_005874231.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| CF003_RS17255 (CF003_0875) | - | 1476567..1477469 (+) | 903 | WP_010956146.1 | helix-turn-helix domain-containing protein | - |
| CF003_RS17260 (CF003_0874) | - | 1477558..1478661 (+) | 1104 | WP_005874222.1 | site-specific integrase | - |
| CF003_RS17265 (CF003_0873) | - | 1478763..1479461 (+) | 699 | WP_005874206.1 | hypothetical protein | - |
| CF003_RS17270 | - | 1479499..1480104 (-) | 606 | WP_043876420.1 | hypothetical protein | - |
| CF003_RS17275 (CF003_0872) | - | 1480366..1480725 (+) | 360 | WP_005874216.1 | helix-turn-helix domain-containing protein | - |
| CF003_RS17280 (CF003_0871) | - | 1480735..1482111 (+) | 1377 | WP_005874156.1 | DUF3987 domain-containing protein | - |
| CF003_RS17285 (CF003_0870) | - | 1482209..1483267 (+) | 1059 | WP_005874198.1 | DUF6371 domain-containing protein | - |
| CF003_RS17290 (CF003_0869) | - | 1483374..1483721 (+) | 348 | WP_039418494.1 | MobC family plasmid mobilization relaxosome protein | - |
| CF003_RS17295 (CF003_0868) | - | 1483718..1484641 (+) | 924 | WP_005874212.1 | relaxase/mobilization nuclease domain-containing protein | - |
| CF003_RS17300 (CF003_0867) | - | 1484638..1485333 (+) | 696 | WP_005874182.1 | hypothetical protein | - |
| CF003_RS17305 (CF003_0866) | - | 1485393..1486538 (-) | 1146 | WP_005874176.1 | ADP-ribosylglycohydrolase family protein | - |
| CF003_RS17310 (CF003_0865) | - | 1486675..1487805 (+) | 1131 | WP_004584862.1 | ISAs1-like element ISPg2 family transposase | - |
| CF003_RS17315 (CF003_0864) | - | 1487902..1488522 (+) | 621 | WP_005874044.1 | master DNA invertase Mpi family serine-type recombinase | - |
| CF003_RS22065 | - | 1488605..1488874 (-) | 270 | WP_230456014.1 | hypothetical protein | - |
| CF003_RS22070 | - | 1488863..1489393 (+) | 531 | WP_230456018.1 | hypothetical protein | - |
| CF003_RS17325 (CF003_0862) | - | 1489383..1492781 (-) | 3399 | WP_010956144.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| CF003_RS17330 (CF003_0861) | - | 1492792..1496274 (-) | 3483 | WP_005874047.1 | helicase-related protein | - |
| CF003_RS17335 (CF003_0860) | - | 1496328..1496648 (-) | 321 | WP_043876418.1 | helix-turn-helix domain-containing protein | - |
| CF003_RS17340 (CF003_0859) | - | 1496718..1497656 (-) | 939 | WP_010956143.1 | HipA domain-containing protein | - |
| CF003_RS17345 (CF003_0858) | - | 1497646..1497981 (-) | 336 | WP_005874041.1 | HipA N-terminal domain-containing protein | - |
| CF003_RS17350 (CF003_0857) | - | 1497978..1498202 (-) | 225 | WP_005874043.1 | helix-turn-helix transcriptional regulator | - |
| CF003_RS17355 (CF003_0856) | - | 1498426..1499331 (-) | 906 | WP_005874039.1 | hypothetical protein | - |
| CF003_RS17360 (CF003_0854) | - | 1499833..1500615 (-) | 783 | WP_004584112.1 | DUF4393 domain-containing protein | - |
| CF003_RS17365 (CF003_0853) | - | 1500652..1501137 (-) | 486 | WP_005874045.1 | HU family DNA-binding protein | - |
| CF003_RS22075 | - | 1501372..1501542 (-) | 171 | WP_080502141.1 | DNA methylase | - |
| CF003_RS17380 (CF003_n71) | - | 1501567..1502648 (-) | 1082 | Protein_1255 | IS5 family transposase | - |
| CF003_RS17385 (CF003_0851) | - | 1502752..1504005 (+) | 1254 | Protein_1256 | AAA family ATPase | - |
| CF003_RS17390 (CF003_0850) | - | 1503993..1504301 (+) | 309 | WP_005874351.1 | helix-turn-helix domain-containing protein | - |
| CF003_RS17395 (CF003_0849) | - | 1504392..1505099 (+) | 708 | WP_005874356.1 | DUF6088 family protein | - |
| CF003_RS17400 (CF003_0848) | - | 1505084..1506082 (+) | 999 | WP_010956139.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| CF003_RS17405 (CF003_0847) | - | 1506187..1507668 (-) | 1482 | WP_394357727.1 | helicase-related protein | - |
| CF003_RS17410 (CF003_0846) | - | 1508059..1508568 (+) | 510 | Protein_1261 | site-specific integrase | - |
| CF003_RS17415 (CF003_n72) | - | 1508665..1509746 (+) | 1082 | Protein_1262 | IS5 family transposase | - |
| CF003_RS22080 | - | 1509772..1509894 (+) | 123 | Protein_1263 | DNA methylase | - |
Sequence
Protein
Download Length: 340 a.a. Molecular weight: 36888.28 Da Isoelectric Point: 5.5493
>NTDB_id=264507 CF003_RS17230 WP_004584116.1 1471436..1472458(-) (recA) [Porphyromonas gingivalis strain W83]
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS
Nucleotide
Download Length: 1023 bp
>NTDB_id=264507 CF003_RS17230 WP_004584116.1 1471436..1472458(-) (recA) [Porphyromonas gingivalis strain W83]
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACTTTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAAGATGTAAGCGTTATCCCCTCCGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTGGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCTGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAGGGTGAAATGGGGGACAACAAGGTTGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATCGTATTCGGAGAAGGTATTTCGCGTTCCGGCGAGATTATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAGCTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACTTTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAAGATGTAAGCGTTATCCCCTCCGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTGGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCTGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAGGGTGAAATGGGGGACAACAAGGTTGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATCGTATTCGGAGAAGGTATTTCGCGTTCCGGCGAGATTATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAGCTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA
Similar proteins
Only experimentally validated proteins are listed.