Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C1H71_RS18775 Genome accession   NZ_CP025781
Coordinates   4223620..4224678 (+) Length   352 a.a.
NCBI ID   WP_130107929.1    Uniprot ID   A0A7G3GEK1
Organism   Iodobacter fluviatilis strain PCH194     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4218620..4229678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1H71_RS18765 (C1H71_19050) - 4220174..4221508 (-) 1335 WP_308418295.1 D-amino acid dehydrogenase -
  C1H71_RS18770 (C1H71_19055) - 4221684..4223546 (+) 1863 WP_130107928.1 ATP-binding protein -
  C1H71_RS18775 (C1H71_19060) recA 4223620..4224678 (+) 1059 WP_130107929.1 recombinase RecA Machinery gene
  C1H71_RS18780 (C1H71_19065) recX 4224681..4225127 (+) 447 WP_130107930.1 recombination regulator RecX -
  C1H71_RS18785 (C1H71_19070) - 4225534..4226412 (-) 879 WP_188053425.1 LysR family transcriptional regulator -
  C1H71_RS18790 (C1H71_19075) - 4226514..4227134 (+) 621 WP_130107932.1 DsbA family protein -
  C1H71_RS18795 (C1H71_19080) - 4227166..4227804 (+) 639 WP_130107933.1 NAD(P)-dependent oxidoreductase -
  C1H71_RS18800 (C1H71_19085) - 4228033..4229538 (-) 1506 WP_262488330.1 AMP nucleosidase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37663.22 Da        Isoelectric Point: 5.5018

>NTDB_id=263756 C1H71_RS18775 WP_130107929.1 4223620..4224678(+) (recA) [Iodobacter fluviatilis strain PCH194]
MDDNKSKALAAALAQIERQFGKGAIMKMGENQIQNDLQVVSTGSLGLDLGLGVGGLPRGRVVEIFGPESSGKTTLCLHVV
AEVQKLGGVAAYIDAENALDPVYASKLGVNVSEMLISQPDTGEQGLEIADMLVRSGGVDIIVVDSVAALTPKAEIEGEMG
DVHVGLQARLMSQALRKLTGNIKRTNTLVIFINQLRMKIGNMMPGQSPETTTGGNALKFYASVRLDIRRIGAVKKGDEII
GNQTKVKIAKNKVAPPFRIVTFDILYGEGISHEGEIIEHGVTHKIVEKSGAWYSYNGNKIGQGIENSRQYLKDNPEIAAE
IEQKIRAKLGAGGLLPIDPAALLDDPKEESDE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=263756 C1H71_RS18775 WP_130107929.1 4223620..4224678(+) (recA) [Iodobacter fluviatilis strain PCH194]
ATGGACGACAACAAGAGCAAGGCACTCGCCGCGGCACTCGCGCAAATCGAACGTCAGTTCGGCAAAGGCGCCATCATGAA
AATGGGGGAGAACCAAATCCAAAATGATCTACAAGTGGTTTCTACCGGATCATTAGGTTTGGATCTAGGCCTTGGCGTTG
GCGGCTTACCACGCGGGCGTGTTGTAGAAATTTTTGGGCCAGAATCATCAGGTAAAACCACACTTTGCTTACACGTTGTA
GCTGAAGTGCAAAAGCTCGGTGGTGTTGCTGCTTATATCGATGCTGAAAACGCACTCGATCCTGTTTACGCTAGCAAACT
AGGCGTAAACGTGTCTGAAATGCTAATTTCCCAGCCAGACACCGGCGAACAAGGCCTTGAAATCGCCGATATGTTGGTTC
GTTCTGGCGGCGTTGATATTATCGTAGTTGACTCCGTAGCCGCCCTTACCCCTAAGGCAGAAATTGAAGGCGAAATGGGT
GATGTGCACGTTGGCCTGCAAGCACGTTTAATGAGCCAAGCCCTACGTAAGCTCACTGGTAATATCAAACGCACTAACAC
CCTGGTGATCTTTATTAACCAGCTACGCATGAAGATCGGCAACATGATGCCAGGGCAAAGCCCTGAAACCACCACCGGTG
GTAATGCACTGAAATTTTATGCATCAGTGCGCCTTGATATCCGCCGGATTGGCGCGGTCAAGAAAGGTGATGAGATTATC
GGCAATCAAACCAAGGTTAAGATCGCCAAAAACAAAGTGGCACCACCGTTCCGCATCGTGACCTTTGATATTCTTTACGG
CGAAGGCATTAGCCATGAAGGTGAAATCATCGAGCACGGTGTTACGCATAAAATCGTCGAAAAGTCAGGCGCTTGGTATA
GCTACAACGGCAATAAAATTGGCCAAGGAATTGAAAACTCACGTCAATATTTGAAAGACAACCCAGAAATTGCCGCTGAA
ATCGAACAAAAAATCCGCGCAAAACTTGGTGCAGGTGGCTTACTACCGATTGATCCTGCTGCGTTATTAGATGATCCAAA
AGAAGAATCTGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G3GEK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

74.618

92.898

0.693
  recA Neisseria gonorrhoeae MS11

74.618

92.898

0.693
  recA Neisseria gonorrhoeae strain FA1090

74.618

92.898

0.693
  recA Ralstonia pseudosolanacearum GMI1000

71.856

94.886

0.682
  recA Pseudomonas stutzeri DSM 10701

70.821

93.466

0.662
  recA Acinetobacter baylyi ADP1

66.382

99.716

0.662
  recA Glaesserella parasuis strain SC1401

65.722

100

0.659
  recA Acinetobacter baumannii D1279779

65.982

96.875

0.639
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.173

93.466

0.628
  recA Vibrio cholerae strain A1552

67.173

93.466

0.628
  recA Helicobacter pylori strain NCTC11637

60.571

99.432

0.602
  recA Helicobacter pylori 26695

60.286

99.432

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.687

95.17

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.388

95.17

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

62.691

92.898

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

61.28

93.182

0.571
  recA Lactococcus lactis subsp. cremoris KW2

59.701

95.17

0.568
  recA Streptococcus mutans UA159

59.337

94.318

0.56
  recA Streptococcus pyogenes NZ131

58.735

94.318

0.554
  recA Streptococcus mitis NCTC 12261

58.788

93.75

0.551
  recA Streptococcus mitis SK321

58.788

93.75

0.551
  recA Streptococcus pneumoniae Rx1

58.788

93.75

0.551
  recA Streptococcus pneumoniae D39

58.788

93.75

0.551
  recA Streptococcus pneumoniae R6

58.788

93.75

0.551
  recA Streptococcus pneumoniae TIGR4

58.788

93.75

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.447

93.466

0.537

Multiple sequence alignment