Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | NEUT_RS04010 | Genome accession | NC_008344 |
| Coordinates | 807264..808295 (+) | Length | 343 a.a. |
| NCBI ID | WP_011633883.1 | Uniprot ID | - |
| Organism | Nitrosomonas eutropha C91 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 768279..807483 | 807264..808295 | flank | -219 |
Gene organization within MGE regions
Location: 768279..808295
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NEUT_RS03800 (Neut_0748) | fliE | 768909..769238 (+) | 330 | WP_011633843.1 | flagellar hook-basal body complex protein FliE | - |
| NEUT_RS03805 (Neut_0749) | - | 769273..770082 (+) | 810 | WP_011633844.1 | flagellar brake protein | - |
| NEUT_RS03810 (Neut_0750) | - | 770103..770444 (-) | 342 | WP_011633845.1 | EscU/YscU/HrcU family type III secretion system export apparatus switch protein | - |
| NEUT_RS03815 (Neut_0751) | - | 770431..771456 (-) | 1026 | WP_011633846.1 | flagellar hook-length control protein FliK | - |
| NEUT_RS14970 (Neut_0752) | - | 771811..772203 (+) | 393 | WP_011633847.1 | helix-turn-helix domain-containing protein | - |
| NEUT_RS14975 (Neut_0753) | - | 772154..772750 (+) | 597 | WP_041353441.1 | IS630 family transposase | - |
| NEUT_RS03835 (Neut_0754) | - | 772798..773283 (-) | 486 | WP_107818333.1 | cytochrome c | - |
| NEUT_RS03840 (Neut_0755) | - | 773285..773809 (-) | 525 | WP_011633850.1 | DUF411 domain-containing protein | - |
| NEUT_RS03845 (Neut_0756) | ttcA | 774207..775148 (+) | 942 | WP_011633851.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| NEUT_RS03850 (Neut_0757) | lipA | 775175..776119 (-) | 945 | WP_011633852.1 | lipoyl synthase | - |
| NEUT_RS03855 (Neut_0758) | lipB | 776109..776786 (-) | 678 | WP_011633853.1 | lipoyl(octanoyl) transferase LipB | - |
| NEUT_RS03860 (Neut_0759) | - | 776874..777137 (-) | 264 | WP_011633854.1 | DUF493 domain-containing protein | - |
| NEUT_RS03865 (Neut_0760) | - | 777147..778007 (-) | 861 | WP_011633855.1 | D-amino acid aminotransferase | - |
| NEUT_RS03870 (Neut_0761) | - | 778027..779169 (-) | 1143 | WP_011633856.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| NEUT_RS03875 (Neut_0762) | rplM | 779292..779726 (+) | 435 | WP_011633857.1 | 50S ribosomal protein L13 | - |
| NEUT_RS03880 (Neut_0763) | rpsI | 779738..780130 (+) | 393 | WP_011633858.1 | 30S ribosomal protein S9 | - |
| NEUT_RS03885 (Neut_0764) | argC | 780263..781291 (+) | 1029 | WP_011633859.1 | N-acetyl-gamma-glutamyl-phosphate reductase | - |
| NEUT_RS03890 (Neut_0765) | - | 781392..782159 (+) | 768 | WP_011633860.1 | DUF6776 family protein | - |
| NEUT_RS03895 (Neut_0766) | - | 782140..782565 (+) | 426 | WP_011633861.1 | polymer-forming cytoskeletal protein | - |
| NEUT_RS03900 (Neut_0767) | recN | 782593..784254 (-) | 1662 | WP_011633862.1 | DNA repair protein RecN | - |
| NEUT_RS03905 (Neut_0768) | - | 784264..785154 (-) | 891 | WP_011633863.1 | NAD kinase | - |
| NEUT_RS03910 (Neut_0769) | hrcA | 785371..786387 (+) | 1017 | WP_011633864.1 | heat-inducible transcriptional repressor HrcA | - |
| NEUT_RS03915 (Neut_0770) | hemH | 786407..787504 (+) | 1098 | WP_011633865.1 | ferrochelatase | - |
| NEUT_RS03920 (Neut_0771) | - | 787616..788407 (+) | 792 | WP_011633866.1 | M48 family metallopeptidase | - |
| NEUT_RS03925 (Neut_0772) | - | 788527..789399 (+) | 873 | WP_011633867.1 | phosphoribulokinase | - |
| NEUT_RS03930 (Neut_0773) | - | 789463..791709 (+) | 2247 | WP_011633868.1 | UvrD-helicase domain-containing protein | - |
| NEUT_RS03935 (Neut_0774) | - | 791716..792507 (-) | 792 | WP_011633869.1 | BPSS1780 family membrane protein | - |
| NEUT_RS03940 (Neut_0775) | - | 792598..793548 (-) | 951 | WP_011633870.1 | homoserine kinase | - |
| NEUT_RS03945 (Neut_0776) | - | 793642..793968 (-) | 327 | WP_242500199.1 | DUF2782 domain-containing protein | - |
| NEUT_RS03950 (Neut_0777) | - | 794083..794802 (-) | 720 | WP_011633872.1 | TIGR00730 family Rossman fold protein | - |
| NEUT_RS03955 (Neut_0778) | polA | 794818..797538 (+) | 2721 | WP_011633873.1 | DNA polymerase I | - |
| NEUT_RS03960 (Neut_0779) | - | 797661..798848 (+) | 1188 | WP_011633874.1 | fatty acid desaturase | - |
| NEUT_RS03965 (Neut_0780) | rpmG | 798930..799085 (-) | 156 | WP_011633875.1 | 50S ribosomal protein L33 | - |
| NEUT_RS03970 (Neut_0781) | rpmB | 799126..799362 (-) | 237 | WP_011633876.1 | 50S ribosomal protein L28 | - |
| NEUT_RS03975 (Neut_0782) | radC | 799431..800105 (-) | 675 | WP_011633877.1 | DNA repair protein RadC | - |
| NEUT_RS03980 (Neut_0783) | coaBC | 800239..801444 (+) | 1206 | WP_011633878.1 | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC | - |
| NEUT_RS03985 (Neut_0784) | dut | 801454..801903 (+) | 450 | WP_011633879.1 | dUTP diphosphatase | - |
| NEUT_RS03990 (Neut_0785) | - | 801978..802322 (+) | 345 | WP_242500200.1 | DUF192 domain-containing protein | - |
| NEUT_RS03995 (Neut_0786) | - | 802695..804752 (-) | 2058 | WP_011633881.1 | sodium-translocating pyrophosphatase | - |
| NEUT_RS04000 (Neut_0787) | - | 804906..806165 (-) | 1260 | WP_011633882.1 | 6-phosphofructokinase | - |
| NEUT_RS04005 (Neut_0788) | adk | 806336..807010 (-) | 675 | WP_041353442.1 | adenylate kinase | - |
| NEUT_RS04010 (Neut_0789) | recA | 807264..808295 (+) | 1032 | WP_011633883.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 343 a.a. Molecular weight: 37366.73 Da Isoelectric Point: 6.1730
>NTDB_id=26316 NEUT_RS04010 WP_011633883.1 807264..808295(+) (recA) [Nitrosomonas eutropha C91]
MDENKNKALTAALAQIEKQYGKGSIMRLGDSDVAKDIQVVSTGSLSLDIALGVGGLPRGRIIEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDPQYAQKIGVNVQELLISQPDNGEQALEITDMLVRSGSVDIVVIDSVAALTPRAEIEGEMG
EPQMGLQARLMSQALRKLTANIKRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKRGEEIVGN
ETRVKVVKNKVAPPFKQADFAILYGEGISRESEIIELGVLHKLIEKAGAWYSYNGEKIGQGRDNVRDYLKEHKDLAHEIE
QKIRAAVDLAETNNRTVPPSPSE
MDENKNKALTAALAQIEKQYGKGSIMRLGDSDVAKDIQVVSTGSLSLDIALGVGGLPRGRIIEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDPQYAQKIGVNVQELLISQPDNGEQALEITDMLVRSGSVDIVVIDSVAALTPRAEIEGEMG
EPQMGLQARLMSQALRKLTANIKRTNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKRGEEIVGN
ETRVKVVKNKVAPPFKQADFAILYGEGISRESEIIELGVLHKLIEKAGAWYSYNGEKIGQGRDNVRDYLKEHKDLAHEIE
QKIRAAVDLAETNNRTVPPSPSE
Nucleotide
Download Length: 1032 bp
>NTDB_id=26316 NEUT_RS04010 WP_011633883.1 807264..808295(+) (recA) [Nitrosomonas eutropha C91]
ATGGACGAAAACAAAAATAAGGCACTTACGGCTGCACTAGCGCAGATTGAAAAACAGTATGGCAAGGGCTCAATCATGCG
GCTTGGTGATAGCGATGTGGCTAAAGATATCCAGGTGGTATCTACCGGTTCGCTGAGTTTGGATATTGCACTGGGTGTGG
GCGGACTTCCGCGCGGGCGTATTATCGAGATTTACGGTCCGGAATCTTCAGGTAAAACTACCCTGACGCTGCAGGTGATA
GCAGAAATGCAAAAGCTTGGTGGAACAGCCGCTTTTATTGATGCAGAACATGCACTGGATCCACAGTATGCTCAAAAAAT
CGGCGTTAACGTACAGGAATTGCTGATTTCCCAGCCAGATAACGGTGAACAGGCGCTAGAGATCACGGATATGCTGGTTC
GATCCGGATCGGTTGATATTGTTGTAATCGATTCGGTTGCGGCACTGACGCCCCGCGCTGAAATAGAAGGAGAAATGGGC
GAGCCGCAGATGGGGTTGCAGGCAAGGTTAATGTCGCAGGCCTTGCGTAAGCTGACCGCCAATATCAAGCGCACCAACAC
CACGGTAATTTTTATCAATCAGATACGCATGAAAATTGGTGTGATGTTTGGTAATCCGGAAACAACCACGGGTGGTAATG
CGCTGAAATTTTATGCTTCCGTTCGCCTGGATATTCGTCGTACCGGATCAATTAAACGTGGTGAAGAAATAGTTGGTAAT
GAGACCCGTGTCAAGGTCGTTAAAAACAAGGTTGCCCCTCCCTTCAAACAGGCAGATTTCGCTATTTTGTACGGCGAAGG
CATCTCGCGCGAGAGCGAGATTATAGAACTGGGTGTGTTGCATAAACTGATCGAGAAAGCCGGCGCTTGGTATTCCTATA
ATGGTGAGAAAATCGGGCAGGGCAGAGATAATGTGCGTGACTACCTGAAAGAGCACAAGGATCTTGCACATGAGATTGAA
CAGAAAATACGTGCGGCAGTTGACCTTGCTGAAACAAATAACCGGACTGTTCCACCTTCTCCCAGCGAATAA
ATGGACGAAAACAAAAATAAGGCACTTACGGCTGCACTAGCGCAGATTGAAAAACAGTATGGCAAGGGCTCAATCATGCG
GCTTGGTGATAGCGATGTGGCTAAAGATATCCAGGTGGTATCTACCGGTTCGCTGAGTTTGGATATTGCACTGGGTGTGG
GCGGACTTCCGCGCGGGCGTATTATCGAGATTTACGGTCCGGAATCTTCAGGTAAAACTACCCTGACGCTGCAGGTGATA
GCAGAAATGCAAAAGCTTGGTGGAACAGCCGCTTTTATTGATGCAGAACATGCACTGGATCCACAGTATGCTCAAAAAAT
CGGCGTTAACGTACAGGAATTGCTGATTTCCCAGCCAGATAACGGTGAACAGGCGCTAGAGATCACGGATATGCTGGTTC
GATCCGGATCGGTTGATATTGTTGTAATCGATTCGGTTGCGGCACTGACGCCCCGCGCTGAAATAGAAGGAGAAATGGGC
GAGCCGCAGATGGGGTTGCAGGCAAGGTTAATGTCGCAGGCCTTGCGTAAGCTGACCGCCAATATCAAGCGCACCAACAC
CACGGTAATTTTTATCAATCAGATACGCATGAAAATTGGTGTGATGTTTGGTAATCCGGAAACAACCACGGGTGGTAATG
CGCTGAAATTTTATGCTTCCGTTCGCCTGGATATTCGTCGTACCGGATCAATTAAACGTGGTGAAGAAATAGTTGGTAAT
GAGACCCGTGTCAAGGTCGTTAAAAACAAGGTTGCCCCTCCCTTCAAACAGGCAGATTTCGCTATTTTGTACGGCGAAGG
CATCTCGCGCGAGAGCGAGATTATAGAACTGGGTGTGTTGCATAAACTGATCGAGAAAGCCGGCGCTTGGTATTCCTATA
ATGGTGAGAAAATCGGGCAGGGCAGAGATAATGTGCGTGACTACCTGAAAGAGCACAAGGATCTTGCACATGAGATTGAA
CAGAAAATACGTGCGGCAGTTGACCTTGCTGAAACAAATAACCGGACTGTTCCACCTTCTCCCAGCGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.