Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | C0058_RS26035 | Genome accession | NZ_CP025624 |
| Coordinates | 5539738..5540796 (-) | Length | 352 a.a. |
| NCBI ID | WP_003208645.1 | Uniprot ID | A0A2N7Y6F3 |
| Organism | Pseudomonas sp. NC02 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 5534909..5567105 | 5539738..5540796 | within | 0 |
Gene organization within MGE regions
Location: 5534909..5567105
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0058_RS26005 (C0058_26005) | - | 5534909..5535271 (-) | 363 | WP_003208635.1 | diacylglycerol kinase | - |
| C0058_RS26010 (C0058_26010) | erdR | 5535347..5535997 (-) | 651 | WP_003208636.1 | response regulator transcription factor ErdR | - |
| C0058_RS26015 (C0058_26015) | - | 5536252..5536962 (-) | 711 | WP_003208638.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| C0058_RS26020 (C0058_26020) | - | 5537168..5537608 (+) | 441 | WP_003208640.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| C0058_RS26025 (C0058_26025) | - | 5537984..5539093 (+) | 1110 | WP_087695311.1 | TIGR00730 family Rossman fold protein | - |
| C0058_RS26030 (C0058_26030) | recX | 5539262..5539729 (-) | 468 | WP_003208644.1 | recombination regulator RecX | - |
| C0058_RS26035 (C0058_26035) | recA | 5539738..5540796 (-) | 1059 | WP_003208645.1 | recombinase RecA | Machinery gene |
| C0058_RS26040 (C0058_26040) | - | 5540880..5541380 (-) | 501 | WP_102370300.1 | CinA family protein | - |
| C0058_RS26045 (C0058_26045) | - | 5541452..5541943 (-) | 492 | WP_102369820.1 | lysis system i-spanin subunit Rz | - |
| C0058_RS26050 (C0058_26050) | - | 5541931..5542488 (-) | 558 | WP_087695309.1 | glycoside hydrolase family 19 protein | - |
| C0058_RS26055 (C0058_26055) | - | 5542519..5543118 (-) | 600 | WP_102369821.1 | phage tail assembly chaperone | - |
| C0058_RS26060 (C0058_26060) | - | 5543127..5544452 (-) | 1326 | WP_102369822.1 | tail fiber protein | - |
| C0058_RS26065 (C0058_26065) | - | 5544464..5545063 (-) | 600 | WP_087695306.1 | YmfQ family protein | - |
| C0058_RS26070 (C0058_26070) | - | 5545051..5546091 (-) | 1041 | WP_102369823.1 | baseplate J/gp47 family protein | - |
| C0058_RS26075 (C0058_26075) | - | 5546081..5546479 (-) | 399 | WP_087695304.1 | phage GP46 family protein | - |
| C0058_RS26080 (C0058_26080) | - | 5546479..5546988 (-) | 510 | WP_017480159.1 | phage baseplate assembly protein V | - |
| C0058_RS26085 (C0058_26085) | - | 5547005..5548042 (-) | 1038 | WP_102369824.1 | phage baseplate assembly protein | - |
| C0058_RS26090 (C0058_26090) | - | 5548046..5549284 (-) | 1239 | WP_102369825.1 | DNA circularization protein | - |
| C0058_RS26095 (C0058_26095) | - | 5549271..5550887 (-) | 1617 | WP_102369826.1 | hypothetical protein | - |
| C0058_RS33120 | - | 5550887..5551012 (-) | 126 | WP_010170085.1 | hypothetical protein | - |
| C0058_RS26100 (C0058_26100) | - | 5551018..5551314 (-) | 297 | WP_102369827.1 | phage tail assembly protein | - |
| C0058_RS26105 (C0058_26105) | - | 5551311..5551658 (-) | 348 | WP_010170089.1 | phage tail tube protein | - |
| C0058_RS26110 (C0058_26110) | - | 5551723..5553219 (-) | 1497 | WP_102369828.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| C0058_RS26115 (C0058_26115) | - | 5553219..5553401 (-) | 183 | WP_087695298.1 | DUF2635 domain-containing protein | - |
| C0058_RS26120 (C0058_26120) | - | 5553398..5553988 (-) | 591 | WP_102369829.1 | hypothetical protein | - |
| C0058_RS26125 (C0058_26125) | - | 5554053..5555060 (-) | 1008 | WP_087695296.1 | phage tail protein | - |
| C0058_RS26130 (C0058_26130) | - | 5555070..5555282 (-) | 213 | WP_087695295.1 | tail protein X | - |
| C0058_RS26135 (C0058_26135) | - | 5555275..5555658 (-) | 384 | WP_087695294.1 | phage tail protein | - |
| C0058_RS26140 (C0058_26140) | - | 5555658..5557850 (-) | 2193 | WP_102369830.1 | phage tail tape measure protein | - |
| C0058_RS26145 (C0058_26145) | - | 5557978..5558559 (-) | 582 | WP_087695292.1 | phage tail assembly protein | - |
| C0058_RS26150 (C0058_26150) | - | 5558611..5559117 (-) | 507 | WP_087695291.1 | phage major tail tube protein | - |
| C0058_RS26155 (C0058_26155) | - | 5559117..5560283 (-) | 1167 | WP_003208663.1 | tail protein | - |
| C0058_RS32850 (C0058_26160) | - | 5560286..5560459 (-) | 174 | WP_003208665.1 | hypothetical protein | - |
| C0058_RS26160 (C0058_26165) | - | 5560546..5560848 (-) | 303 | WP_256344671.1 | hypothetical protein | - |
| C0058_RS26165 (C0058_26170) | - | 5560851..5561633 (-) | 783 | WP_087695289.1 | phage tail protein | - |
| C0058_RS26170 (C0058_26175) | - | 5561680..5562213 (-) | 534 | WP_087695288.1 | phage tail protein | - |
| C0058_RS26175 (C0058_26180) | - | 5562210..5562938 (-) | 729 | WP_102369831.1 | phage tail protein I | - |
| C0058_RS26180 (C0058_26185) | - | 5562935..5563930 (-) | 996 | WP_023659217.1 | baseplate J/gp47 family protein | - |
| C0058_RS26185 (C0058_26190) | - | 5563927..5564259 (-) | 333 | WP_003208675.1 | phage baseplate protein | - |
| C0058_RS26190 (C0058_26195) | - | 5564272..5564880 (-) | 609 | WP_003208676.1 | phage baseplate assembly protein V | - |
| C0058_RS26195 (C0058_26200) | - | 5564884..5565399 (-) | 516 | WP_102369832.1 | hypothetical protein | - |
| C0058_RS26200 (C0058_26205) | - | 5565422..5565760 (-) | 339 | WP_003208680.1 | phage holin family protein | - |
| C0058_RS26205 (C0058_26210) | - | 5566371..5567105 (-) | 735 | WP_032899152.1 | XRE family transcriptional regulator | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37620.18 Da Isoelectric Point: 5.3036
>NTDB_id=263141 C0058_RS26035 WP_003208645.1 5539738..5540796(-) (recA) [Pseudomonas sp. NC02]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLEK
QIRDKLLTPAPDVKAAANREPVEEVEEVDTDI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDVAATLEK
QIRDKLLTPAPDVKAAANREPVEEVEEVDTDI
Nucleotide
Download Length: 1059 bp
>NTDB_id=263141 C0058_RS26035 WP_003208645.1 5539738..5540796(-) (recA) [Pseudomonas sp. NC02]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGACACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCTT
GGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTTGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTTGCGGATAACCCGGATGTTGCCGCTACGCTCGAGAAG
CAGATCCGCGACAAGTTGCTGACCCCGGCACCTGACGTCAAGGCTGCCGCCAACCGCGAGCCGGTTGAAGAAGTAGAAGA
AGTCGACACTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGACACCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCTT
GGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTTGGTAGCGAA
ACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTTGCGGATAACCCGGATGTTGCCGCTACGCTCGAGAAG
CAGATCCGCGACAAGTTGCTGACCCCGGCACCTGACGTCAAGGCTGCCGCCAACCGCGAGCCGGTTGAAGAAGTAGAAGA
AGTCGACACTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.