Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C0119_RS08855 Genome accession   NZ_CP025618
Coordinates   1807101..1808144 (+) Length   347 a.a.
NCBI ID   WP_004812670.1    Uniprot ID   A0A0A8JAI2
Organism   Acinetobacter schindleri strain SGAir0122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1802101..1813144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0119_RS08825 (C0119_13480) - 1802518..1803183 (-) 666 WP_004812676.1 NAD-dependent epimerase/dehydratase family protein -
  C0119_RS08830 (C0119_13475) rpsT 1803398..1803667 (+) 270 WP_004786139.1 30S ribosomal protein S20 -
  C0119_RS16180 - 1803916..1804041 (-) 126 WP_004812675.1 hypothetical protein -
  C0119_RS08835 (C0119_13470) - 1804161..1804910 (-) 750 WP_008305272.1 histidine phosphatase family protein -
  C0119_RS08840 (C0119_13465) - 1804971..1805822 (-) 852 WP_004812673.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  C0119_RS08845 (C0119_13460) - 1805835..1806521 (+) 687 WP_004812672.1 HAD-IA family hydrolase -
  C0119_RS08850 (C0119_13455) - 1806514..1806954 (+) 441 WP_004812671.1 RNA-binding S4 domain-containing protein -
  C0119_RS08855 (C0119_13450) recA 1807101..1808144 (+) 1044 WP_004812670.1 recombinase RecA Machinery gene
  C0119_RS08860 (C0119_13445) - 1808222..1808839 (+) 618 WP_004812668.1 regulatory protein RecX -
  C0119_RS08870 (C0119_13435) - 1809440..1810261 (+) 822 WP_004812666.1 YbgF trimerization domain-containing protein -
  C0119_RS08875 (C0119_13430) lpxA 1810318..1811106 (-) 789 WP_004812664.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  C0119_RS08880 (C0119_13425) fabZ 1811103..1811588 (-) 486 WP_008305276.1 3-hydroxyacyl-ACP dehydratase FabZ -
  C0119_RS08885 (C0119_13420) lpxD 1811594..1812664 (-) 1071 WP_008305277.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37677.12 Da        Isoelectric Point: 4.9489

>NTDB_id=263056 C0119_RS08855 WP_004812670.1 1807101..1808144(+) (recA) [Acinetobacter schindleri strain SGAir0122]
MDENKNKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRYLEENKALADTIEK
LIREQLLTTGNVVEDKDEEEPADFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=263056 C0119_RS08855 WP_004812670.1 1807101..1808144(+) (recA) [Acinetobacter schindleri strain SGAir0122]
ATGGATGAGAATAAAAACAAGGCGCTGAATGCTGCCTTAAGCCAGATTGAAAAACAGTTTGGCAAAAACACAGTAATGCG
TCTTGGTGATAATACCGTTCAAGCAGTTGAAGCTGTATCTACAGGTTCTTTAACGCTTGATATCGCGCTCGGTATTGGTG
GTTTACCAAAAGGCCGTATTATCGAGATCTATGGTCCTGAATCTTCAGGTAAAACCACAATGACATTACAAGCGATTGCA
GAATGTCAAAAAGCTGGTGGTACTTGTGCATTCATCGATGCGGAACACGCGCTTGATCCTCAATATGCACGTAAATTGGG
TGTAGATATCGACAACCTGCTGGTATCTCAACCCGACCACGGTGAACAGGCACTTGAAATTGCCGACATGCTTGTACGTT
CAGGCGCGATTGACCTGATCGTTGTCGACTCCGTAGCTGCCTTAACCCCTCGTGCTGAAATTGAAGGCGAAATGGGTGAC
TCACACATGGGTCTGCAAGCACGTTTGATGAGCCAGGCACTGCGTAAAATCACTGGTAATGCCAAGCGTTCAAACTGTAT
GGTGATCTTCATTAACCAGATCCGTATGAAAATTGGTGTTATGTTTGGTAGTCCGGAAACTACTACTGGTGGTAATGCAC
TGAAATTCTATGCTTCTGTACGTCTGGATATCCGACGTATTGGTCAGGTAAAAGAAGGCGACGAAATCGTTGGTTCTGAA
ACTAAAGTTAAAGTTGTGAAGAACAAAATGGCGCCTCCATTTAAGGAAGCTCTATTCCAAATTCTGTATGGTAAAGGTGT
AAACCATCTCGGTGAATTGATTGACCTTGCAGTACAGCAGGAAATCGTACAGAAAGCCGGTGCCTGGTACTCTTATCAAG
GTGACAAGATTGGCCAAGGCAAGAACAACACTATTCGTTATCTGGAAGAGAACAAAGCACTTGCAGATACCATTGAAAAA
CTGATTCGTGAGCAGCTTTTGACGACAGGCAATGTGGTTGAAGATAAAGACGAAGAAGAACCAGCAGACTTTCTGGATGC
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8JAI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

90.544

100

0.911
  recA Acinetobacter baylyi ADP1

89.429

100

0.902
  recA Pseudomonas stutzeri DSM 10701

75.684

94.813

0.718
  recA Vibrio cholerae strain A1552

73.795

95.677

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.795

95.677

0.706
  recA Glaesserella parasuis strain SC1401

70.091

95.389

0.669
  recA Ralstonia pseudosolanacearum GMI1000

72.611

90.49

0.657
  recA Neisseria gonorrhoeae MS11

63.506

100

0.637
  recA Neisseria gonorrhoeae MS11

63.506

100

0.637
  recA Neisseria gonorrhoeae strain FA1090

63.506

100

0.637
  recA Helicobacter pylori strain NCTC11637

63.717

97.695

0.622
  recA Helicobacter pylori 26695

63.422

97.695

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.941

97.983

0.617
  recA Streptococcus pneumoniae TIGR4

60.756

99.135

0.602
  recA Streptococcus pneumoniae Rx1

60.756

99.135

0.602
  recA Streptococcus pneumoniae D39

60.756

99.135

0.602
  recA Streptococcus pneumoniae R6

60.756

99.135

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.84

95.389

0.599
  recA Streptococcus mutans UA159

60.35

98.847

0.597
  recA Streptococcus mitis NCTC 12261

60.058

98.847

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

62.733

92.795

0.582
  recA Streptococcus mitis SK321

61.656

93.948

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.656

93.948

0.579
  recA Streptococcus pyogenes NZ131

61.538

93.66

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.084

0.55
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

92.507

0.545

Multiple sequence alignment