Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SHEWMR4_RS05875 Genome accession   NC_008321
Coordinates   1321203..1322276 (+) Length   357 a.a.
NCBI ID   WP_011621914.1    Uniprot ID   -
Organism   Shewanella sp. MR-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1316203..1327276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHEWMR4_RS05865 (Shewmr4_1123) rpoS 1317114..1318094 (+) 981 WP_011621912.1 RNA polymerase sigma factor RpoS -
  SHEWMR4_RS05870 (Shewmr4_1124) mutS 1318235..1320820 (-) 2586 WP_011621913.1 DNA mismatch repair protein MutS -
  SHEWMR4_RS05875 (Shewmr4_1125) recA 1321203..1322276 (+) 1074 WP_011621914.1 recombinase RecA Machinery gene
  SHEWMR4_RS05880 (Shewmr4_1126) - 1322294..1322761 (+) 468 WP_413540386.1 regulatory protein RecX -
  SHEWMR4_RS05885 (Shewmr4_1127) alaS 1323037..1325661 (+) 2625 WP_011621916.1 alanine--tRNA ligase -
  SHEWMR4_RS05890 (Shewmr4_1128) - 1325671..1326927 (+) 1257 WP_011621917.1 aspartate kinase -
  SHEWMR4_RS05895 (Shewmr4_1129) csrA 1327046..1327243 (+) 198 WP_006082602.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38094.47 Da        Isoelectric Point: 4.8761

>NTDB_id=26269 SHEWMR4_RS05875 WP_011621914.1 1321203..1322276(+) (recA) [Shewanella sp. MR-4]
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIAAEI
DKTLRELLLSNPAALSSSASDDENSEGNVDFETGEVF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=26269 SHEWMR4_RS05875 WP_011621914.1 1321203..1322276(+) (recA) [Shewanella sp. MR-4]
ATGAAGGTCGATCCAAACAAAGAGAAAGCACTTGCTGCGGTATTGAGCCAAATTGAAAAGCAATTTGGTAAAGGCTCCAT
CATGAAGCTGGGCGAAGACCGCTCTATGGATGTTGAGACTATTTCTACTGGTTCACTTTCCCTTGACGTCGCCTTAGGTG
CTGGCGGTTTACCAATGGGACGTATCGTTGAGATTTATGGTCCTGAATCATCAGGTAAAACAACGCTAACATTAGAAGTG
ATTGCCGCCGCTCAGCGGGAAGGTAAAACCTGTGCCTTTATCGACGCCGAGCACGCGCTAGACCCTATCTATGCTAAAAA
ATTAGGCGTAGATATCGATAACTTACTGTGTTCACAACCCGATACTGGTGAACAAGCCCTTGAGATCTGTGATGCGTTAA
CCCGCTCTGGCGCAGTAGATGTGATCATCGTTGACTCGGTCGCGGCATTAACACCCAAAGCAGAAATTGAAGGTGAAATC
GGTGACTCACATATGGGCTTAGCGGCGCGTATGATGAGCCAAGCGATGCGTAAGTTAGCGGGTAACCTCAAGCAATCGAA
TACACTGTTAATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACAACGGGCGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTTGATATTCGCCGTACTGGTGCTATCAAAGAAGGCGATGAAGTGGTAGGT
AACGAGACGCGCGTTAAAGTGGTTAAAAACAAAGTTGCTGCGCCGTTTAAGCAAGCTGAGTTCCAAATTCTTTACGGTCA
AGGTATCAACCGTACCGGTGAATTAGTCGATTTAGGTGTGGCTCATAAACTTATCGAAAAAGCCGGTGCATGGTACAGCT
ACAAGGGTGACAAGATTGGTCAGGGCCGTGCAAATGCTGGCAAATATTTGACTGAAAACCCAGCGATAGCAGCTGAAATT
GATAAAACACTACGTGAGCTATTATTGAGTAACCCTGCAGCCTTGTCATCATCAGCTTCTGATGATGAGAATAGTGAAGG
CAATGTTGACTTCGAAACAGGCGAAGTATTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.899

96.639

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.899

96.639

0.801
  recA Pseudomonas stutzeri DSM 10701

74.924

92.717

0.695
  recA Acinetobacter baylyi ADP1

70.349

96.359

0.678
  recA Glaesserella parasuis strain SC1401

68.857

98.039

0.675
  recA Acinetobacter baumannii D1279779

70.088

95.518

0.669
  recA Ralstonia pseudosolanacearum GMI1000

69.018

91.317

0.63
  recA Neisseria gonorrhoeae MS11

69.35

90.476

0.627
  recA Neisseria gonorrhoeae MS11

69.35

90.476

0.627
  recA Neisseria gonorrhoeae strain FA1090

69.35

90.476

0.627
  recA Streptococcus pneumoniae TIGR4

63.415

91.877

0.583
  recA Streptococcus pneumoniae R6

63.415

91.877

0.583
  recA Streptococcus pneumoniae D39

63.415

91.877

0.583
  recA Streptococcus pneumoniae Rx1

63.415

91.877

0.583
  recA Streptococcus mitis SK321

62.805

91.877

0.577
  recA Streptococcus mitis NCTC 12261

62.805

91.877

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.71

96.639

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.961

93.277

0.569
  recA Streptococcus pyogenes NZ131

61.585

91.877

0.566
  recA Streptococcus mutans UA159

61.92

90.476

0.56
  recA Helicobacter pylori strain NCTC11637

60.241

92.997

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Helicobacter pylori 26695

59.94

92.997

0.557
  recA Lactococcus lactis subsp. cremoris KW2

60.061

91.877

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

61.442

89.356

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.27

88.235

0.541

Multiple sequence alignment