Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SYNC_RS02135 Genome accession   NC_008319
Coordinates   440506..441654 (+) Length   382 a.a.
NCBI ID   WP_011618404.1    Uniprot ID   Q0ID00
Organism   Synechococcus sp. CC9311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 435506..446654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNC_RS02110 (sync_0438) - 436179..436640 (+) 462 WP_011618400.1 NAD(P)H-quinone oxidoreductase subunit N -
  SYNC_RS02115 (sync_0439) - 436607..437680 (+) 1074 WP_011618401.1 LdpA C-terminal domain-containing domain -
  SYNC_RS02120 (sync_0440) - 437747..439393 (+) 1647 WP_011618402.1 AAA family ATPase -
  SYNC_RS02130 (sync_0442) - 439589..440353 (+) 765 WP_011618403.1 HAD family hydrolase -
  SYNC_RS02135 (sync_0443) recA 440506..441654 (+) 1149 WP_011618404.1 recombinase RecA Machinery gene
  SYNC_RS02140 (sync_0444) - 441651..442001 (-) 351 WP_011618405.1 DUF1815 family protein -
  SYNC_RS02145 (sync_0445) - 442093..442332 (-) 240 WP_011618406.1 DUF2839 domain-containing protein -
  SYNC_RS02150 (sync_0446) - 442374..443828 (-) 1455 WP_011618407.1 helicase -
  SYNC_RS02155 (sync_0447) - 443913..444791 (+) 879 WP_011618408.1 prephenate/arogenate dehydrogenase -
  SYNC_RS02160 (sync_0448) crtD 444801..446330 (-) 1530 WP_011618409.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40426.10 Da        Isoelectric Point: 6.5251

>NTDB_id=26254 SYNC_RS02135 WP_011618404.1 440506..441654(+) (recA) [Synechococcus sp. CC9311]
MPADVKAAQSSAGDSRPGERDKALDLVLGQIERNFGKGSIMRLGDASRMRVETISTGALTLDLALGGGYPKGRVVEVYGP
ESSGKTTLTLHAIAEVQKRGGVAAFVDAEHALDPVYAASLGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVVDSVA
ALTPRAEIEGEMGDLAVGAQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGVTYGNPETTTGGNALKFYASVRLDIRR
IQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCVLDLAEETGVVTRKGAWYSYEGDNIGQGRDNTIG
WLEQNPEAKDAIEVLVRQKLTEGSEVTANSMRPLAAAARSAAAKPSAKTADTDKKLVADGAA

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=26254 SYNC_RS02135 WP_011618404.1 440506..441654(+) (recA) [Synechococcus sp. CC9311]
ATGCCAGCCGACGTGAAAGCCGCTCAATCCTCTGCAGGAGATTCCCGTCCAGGCGAGAGGGACAAAGCCTTAGACCTTGT
GCTCGGTCAGATCGAGCGAAATTTTGGAAAGGGTTCAATCATGCGTTTGGGGGATGCCTCCCGAATGCGGGTGGAAACCA
TCTCCACGGGGGCCCTTACTCTTGACCTCGCCCTTGGCGGCGGGTACCCCAAGGGGCGAGTGGTTGAGGTCTACGGGCCT
GAGAGTTCAGGTAAGACCACGCTCACGCTTCATGCCATCGCTGAGGTGCAAAAGCGTGGAGGAGTGGCGGCATTCGTTGA
TGCTGAGCACGCCCTTGATCCTGTTTATGCGGCCTCCCTCGGCGTTGACATCGAGAATCTGCTGGTCTCCCAGCCGGATA
CGGGTGAGATGGCACTTGAGATCGTCGATCAGCTGGTTCGTTCTGCTGCGGTCGACATTGTTGTGGTCGACTCTGTTGCC
GCGCTGACGCCAAGAGCGGAAATTGAGGGAGAGATGGGGGATTTGGCTGTTGGAGCCCAAGCTCGCTTGATGAGCCAGGC
GATGCGCAAGATCACTGGCAACATTGGTAAGTCCGGTTGCACCGTGATTTTCCTGAACCAGCTTCGGCTGAAGATCGGAG
TGACCTATGGCAATCCCGAAACCACAACTGGCGGCAATGCGCTCAAGTTCTACGCCTCGGTACGGCTTGATATTCGGCGG
ATCCAAACCCTCAAACGTGGCACTGAGGAGTACGGCATTCGGGCGAAGGTGAAAGTGGCGAAAAATAAGGTGGCACCTCC
GTTTCGTATTGCTGAATTCGACATTTTGTTTGGGCGTGGGATCAGCACACTCGGCTGTGTTCTCGACTTAGCCGAGGAAA
CGGGCGTGGTAACGCGCAAAGGGGCCTGGTACAGCTACGAGGGCGACAACATTGGCCAAGGTCGTGACAACACAATCGGT
TGGCTCGAGCAAAACCCTGAGGCCAAGGACGCCATCGAAGTGCTTGTGCGTCAAAAGTTGACCGAAGGATCGGAGGTGAC
AGCGAATTCGATGCGTCCTTTGGCTGCTGCAGCCCGCTCAGCTGCTGCCAAGCCTTCGGCTAAAACTGCTGATACAGATA
AAAAGTTAGTTGCTGATGGAGCCGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0ID00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.955

86.649

0.563
  recA Acinetobacter baumannii D1279779

64.286

84.293

0.542
  recA Pseudomonas stutzeri DSM 10701

64.286

84.293

0.542
  recA Ralstonia pseudosolanacearum GMI1000

64.952

81.414

0.529
  recA Neisseria gonorrhoeae strain FA1090

60.542

86.911

0.526
  recA Neisseria gonorrhoeae MS11

60.542

86.911

0.526
  recA Neisseria gonorrhoeae MS11

60.542

86.911

0.526
  recA Glaesserella parasuis strain SC1401

61.656

85.34

0.526
  recA Vibrio cholerae strain A1552

62.112

84.293

0.524
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.112

84.293

0.524
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

84.031

0.521
  recA Helicobacter pylori 26695

58.58

88.482

0.518
  recA Helicobacter pylori strain NCTC11637

58.58

88.482

0.518
  recA Streptococcus mitis NCTC 12261

56.16

91.361

0.513
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

86.126

0.51
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.436

84.031

0.508
  recA Streptococcus pneumoniae D39

57.143

87.958

0.503
  recA Streptococcus pneumoniae Rx1

57.143

87.958

0.503
  recA Streptococcus pneumoniae R6

57.143

87.958

0.503
  recA Streptococcus pneumoniae TIGR4

57.143

87.958

0.503
  recA Latilactobacillus sakei subsp. sakei 23K

60

83.77

0.503
  recA Streptococcus mutans UA159

58.462

85.079

0.497
  recA Streptococcus mitis SK321

56.886

87.435

0.497
  recA Lactococcus lactis subsp. cremoris KW2

56.716

87.696

0.497
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.689

87.435

0.487
  recA Streptococcus pyogenes NZ131

56.575

85.602

0.484

Multiple sequence alignment