Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LLG50_RS01670 Genome accession   NZ_CP025500
Coordinates   335093..336256 (+) Length   387 a.a.
NCBI ID   WP_103054434.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 330093..341256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLG50_RS01655 (LLG50_01655) era 331326..332237 (+) 912 WP_003131632.1 GTPase Era -
  LLG50_RS01660 (LLG50_01660) asnB 332335..333927 (+) 1593 WP_103054433.1 asparagine synthase B -
  LLG50_RS01665 (LLG50_01665) mutM 334121..334939 (+) 819 WP_029344824.1 DNA-formamidopyrimidine glycosylase -
  LLG50_RS01670 (LLG50_01670) recA 335093..336256 (+) 1164 WP_103054434.1 recombinase RecA Machinery gene
  LLG50_RS01675 (LLG50_01675) - 336269..337642 (-) 1374 WP_003131627.1 amino acid permease -
  LLG50_RS01680 (LLG50_01680) - 337711..339090 (-) 1380 WP_012897204.1 amino acid permease -
  LLG50_RS01685 (LLG50_01685) - 339237..339617 (+) 381 WP_010905299.1 YlbF family regulator -
  LLG50_RS01690 (LLG50_01690) - 339604..339918 (+) 315 WP_003131624.1 YlbG family protein -
  LLG50_RS01695 (LLG50_01695) - 340148..340666 (+) 519 WP_003131623.1 hypothetical protein -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 41374.23 Da        Isoelectric Point: 5.4075

>NTDB_id=262082 LLG50_RS01670 WP_103054434.1 335093..336256(+) (recA) [Lactococcus lactis subsp. lactis strain G50]
MATKKKTNFDDITKKYGAERDKALADALALIEKDFGKGSLMRLGEAANQKVSVVSSGSLALDIALGAGGYPKGRIVEIYG
PESSGKTTVALHAVAAVQKEGGIAAFIDAENALDPEYAKALGVNIDELLLSQPDYGEQGLQIAEKLITSGAVDLVVIDSV
AALVPKAEIDGEIGDSSVGLQARMMSQAMRKLAGHINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTQIGKITKIKVVKNKVAPPFKVALVDIMFGQGISRTGELLNIAVDEGIIKKSGAWFAYNDEKIGQGA
EKAKNYLKEHQEIFDEIDHKVRAAHGLLDEAGVAETTEDTSTKAKATKAKKEEKVVETEEIELELED

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=262082 LLG50_RS01670 WP_103054434.1 335093..336256(+) (recA) [Lactococcus lactis subsp. lactis strain G50]
TTGGCAACAAAGAAAAAAACAAATTTTGATGATATTACCAAAAAATATGGCGCTGAACGTGACAAAGCTTTGGCAGATGC
ACTTGCTCTGATTGAAAAAGACTTTGGGAAAGGTTCACTTATGCGTCTTGGCGAAGCAGCCAACCAGAAAGTGTCAGTAG
TAAGTTCAGGCTCACTTGCACTTGATATTGCGCTTGGTGCAGGTGGATATCCTAAAGGACGTATCGTTGAAATCTACGGA
CCAGAGTCTTCTGGTAAAACAACAGTCGCTCTTCATGCCGTTGCAGCGGTTCAAAAAGAAGGTGGAATTGCAGCCTTTAT
CGATGCTGAAAATGCGCTTGACCCAGAATATGCAAAAGCGCTCGGTGTCAATATCGATGAACTTTTACTTTCACAACCAG
ACTATGGTGAACAAGGGCTTCAAATTGCTGAAAAATTGATTACATCTGGTGCAGTTGACTTAGTTGTTATTGACTCAGTT
GCCGCTTTGGTACCTAAAGCCGAAATTGACGGTGAAATTGGTGACAGTTCAGTTGGGCTTCAAGCTCGTATGATGTCACA
AGCCATGCGTAAACTTGCAGGACATATTAATAAAACAAAAACAACAGCTATTTTCATCAACCAATTGCGTGAAAAAGTTG
GGGTTATGTTTGGTTCGCCAGAAACAACACCTGGTGGTCGTGCATTGAAATTCTACGCTTCTGTACGTCTTGATGTACGT
GGTTCAACAAAAATCGAAGAAGGTTCTGGTGATAACAAGACCCAAATCGGTAAAATCACAAAAATCAAAGTCGTTAAAAA
TAAAGTGGCTCCACCATTCAAGGTTGCTCTCGTAGATATCATGTTTGGTCAAGGGATTTCAAGAACCGGTGAACTTTTAA
ACATTGCTGTTGATGAAGGAATCATCAAAAAATCAGGTGCTTGGTTTGCTTACAATGACGAAAAAATTGGTCAAGGAGCA
GAAAAAGCGAAGAACTATCTCAAAGAACACCAAGAAATTTTTGATGAAATTGACCATAAAGTTCGTGCCGCACACGGTCT
TCTTGATGAAGCAGGAGTAGCAGAAACTACAGAAGATACTTCAACAAAAGCTAAGGCAACAAAAGCTAAAAAAGAAGAAA
AAGTAGTCGAAACTGAAGAAATTGAACTCGAACTCGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

97.74

91.473

0.894
  recA Streptococcus pneumoniae D39

75.065

99.483

0.747
  recA Streptococcus pneumoniae R6

75.065

99.483

0.747
  recA Streptococcus pneumoniae TIGR4

75.065

99.483

0.747
  recA Streptococcus pneumoniae Rx1

75.065

99.483

0.747
  recA Streptococcus mitis NCTC 12261

74.286

99.483

0.739
  recA Streptococcus mitis SK321

73.766

99.483

0.734
  recA Streptococcus mutans UA159

73.438

99.225

0.729
  recA Streptococcus pyogenes NZ131

78.963

89.664

0.708
  recA Latilactobacillus sakei subsp. sakei 23K

70.393

85.53

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

64.881

86.822

0.563
  recA Glaesserella parasuis strain SC1401

54.286

99.483

0.54
  recA Vibrio cholerae strain A1552

62.229

83.463

0.519
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

83.463

0.519
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

85.013

0.517
  recA Neisseria gonorrhoeae MS11

59.337

85.788

0.509
  recA Neisseria gonorrhoeae MS11

59.337

85.788

0.509
  recA Neisseria gonorrhoeae strain FA1090

59.337

85.788

0.509
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.509

84.238

0.501
  recA Acinetobacter baylyi ADP1

59.752

83.463

0.499
  recA Pseudomonas stutzeri DSM 10701

58.951

83.721

0.494
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.41

84.496

0.494
  recA Acinetobacter baumannii D1279779

59.133

83.463

0.494
  recA Ralstonia pseudosolanacearum GMI1000

60.252

81.912

0.494
  recA Helicobacter pylori 26695

57.751

85.013

0.491
  recA Helicobacter pylori strain NCTC11637

57.751

85.013

0.491

Multiple sequence alignment