Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CXB49_RS14440 Genome accession   NZ_CP025429
Coordinates   3238329..3239381 (+) Length   350 a.a.
NCBI ID   WP_101709056.1    Uniprot ID   A0A2H5DY09
Organism   Chromobacterium sp. ATCC 53434     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3233329..3244381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB49_RS14420 (CXB49_14420) - 3233706..3234032 (-) 327 WP_101709053.1 YbaB/EbfC family nucleoid-associated protein -
  CXB49_RS14425 (CXB49_14425) dnaX 3234038..3235966 (-) 1929 WP_101709054.1 DNA polymerase III subunit gamma/tau -
  CXB49_RS14430 (CXB49_14430) mltB 3236061..3237104 (-) 1044 WP_233492813.1 lytic murein transglycosylase B -
  CXB49_RS14435 (CXB49_14435) hrcA 3237151..3238170 (-) 1020 WP_369826495.1 heat-inducible transcriptional repressor HrcA -
  CXB49_RS14440 (CXB49_14440) recA 3238329..3239381 (+) 1053 WP_101709056.1 recombinase RecA Machinery gene
  CXB49_RS14445 (CXB49_14445) recX 3239381..3239839 (+) 459 WP_101709057.1 recombination regulator RecX -
  CXB49_RS14450 (CXB49_14450) - 3239843..3240301 (+) 459 WP_101709058.1 SRPBCC domain-containing protein -
  CXB49_RS14455 (CXB49_14455) alaS 3240365..3242998 (+) 2634 WP_101709059.1 alanine--tRNA ligase -
  CXB49_RS14460 (CXB49_14460) - 3243119..3243604 (+) 486 WP_101709060.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37842.19 Da        Isoelectric Point: 5.0582

>NTDB_id=261274 CXB49_RS14440 WP_101709056.1 3238329..3239381(+) (recA) [Chromobacterium sp. ATCC 53434]
MASEDKSKALAAALSQIEKQFGKGSIMRMSDNQINENLQVVSTGSLSLDLALGVGGLPRGRVVEIYGPESSGKTTLCLQA
VAEMQKLGGTCAYIDAENALDPQYAQKLGVKVDDLLISQPDTGEQALEICDMLVRSSGVDLIVIDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVIG
NDTRVKVVKNKVSPPFRQADFEILYGEGISRQGEIIELGVKHGFIDKSGAWYAYNGQKIGQGKDNTREWLKANPAIAAEI
ERKIREAVGVKIEINESQGDEEFADDALDA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=261274 CXB49_RS14440 WP_101709056.1 3238329..3239381(+) (recA) [Chromobacterium sp. ATCC 53434]
ATGGCTTCCGAAGACAAGAGCAAGGCGCTGGCCGCCGCCCTCTCCCAGATTGAAAAGCAATTTGGCAAGGGCTCCATCAT
GCGCATGAGCGACAACCAGATCAACGAAAACCTGCAGGTGGTCTCCACCGGCTCGCTGAGCCTGGACCTGGCGCTGGGCG
TCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAAATCTACGGCCCGGAGTCGTCCGGCAAGACCACCCTGTGTCTGCAAGCA
GTGGCCGAGATGCAAAAATTGGGCGGCACCTGCGCCTACATCGACGCCGAAAACGCGCTGGACCCGCAATATGCGCAAAA
GCTGGGCGTCAAAGTCGACGACCTGCTGATCTCCCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGCGACATGCTGG
TGCGCTCCAGCGGCGTCGATCTGATCGTGATCGACTCGGTCGCCGCGCTGGTGCCGAAGGCTGAAATCGAAGGCGAGATG
GGCGACAGCCACGTCGGCCTGCAAGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCACCAA
CACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGCGGCATCAAGAAGGGCGAGGAAGTGATCGGC
AACGACACCCGCGTCAAAGTGGTGAAGAACAAGGTTTCCCCGCCGTTCCGCCAGGCCGATTTCGAAATCCTGTACGGCGA
GGGCATCTCCCGCCAGGGCGAAATCATCGAGCTGGGCGTCAAGCACGGCTTCATCGACAAGTCCGGCGCCTGGTACGCGT
ACAACGGCCAGAAGATCGGCCAGGGCAAGGACAACACCCGCGAGTGGCTGAAGGCCAATCCGGCGATCGCCGCCGAGATC
GAGCGCAAGATCCGCGAAGCGGTCGGCGTCAAGATCGAGATCAACGAAAGCCAGGGCGACGAAGAGTTCGCCGACGACGC
CCTCGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H5DY09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

76.991

96.857

0.746
  recA Neisseria gonorrhoeae MS11

76.991

96.857

0.746
  recA Neisseria gonorrhoeae MS11

76.991

96.857

0.746
  recA Ralstonia pseudosolanacearum GMI1000

79.618

89.714

0.714
  recA Pseudomonas stutzeri DSM 10701

74.224

92

0.683
  recA Acinetobacter baylyi ADP1

68.935

96.571

0.666
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.517

92.286

0.66
  recA Vibrio cholerae strain A1552

71.517

92.286

0.66
  recA Glaesserella parasuis strain SC1401

70.462

92.857

0.654
  recA Acinetobacter baumannii D1279779

70.588

92.286

0.651
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.537

96.857

0.606
  recA Helicobacter pylori 26695

62.952

94.857

0.597
  recA Helicobacter pylori strain NCTC11637

62.952

94.857

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

95.429

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

62.727

94.286

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.883

93.143

0.586
  recA Streptococcus mutans UA159

58.841

98.571

0.58
  recA Streptococcus mitis NCTC 12261

58.309

98

0.571
  recA Lactococcus lactis subsp. cremoris KW2

60.606

94.286

0.571
  recA Streptococcus mitis SK321

58.017

98

0.569
  recA Streptococcus pyogenes NZ131

59.091

94.286

0.557
  recA Streptococcus pneumoniae Rx1

58.788

94.286

0.554
  recA Streptococcus pneumoniae D39

58.788

94.286

0.554
  recA Streptococcus pneumoniae R6

58.788

94.286

0.554
  recA Streptococcus pneumoniae TIGR4

58.788

94.286

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.798

93.429

0.54

Multiple sequence alignment