Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HAC_RS01505 Genome accession   NC_008229
Coordinates   284618..285661 (+) Length   347 a.a.
NCBI ID   WP_011577290.1    Uniprot ID   Q17YV1
Organism   Helicobacter acinonychis str. Sheeba     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 279618..290661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAC_RS01470 (Hac_0327) - 279937..280155 (+) 219 WP_011577283.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  HAC_RS01475 (Hac_0328) ccoP 280157..281035 (+) 879 WP_011577284.1 cytochrome-c oxidase, cbb3-type subunit III -
  HAC_RS01480 (Hac_0329) - 281046..281252 (+) 207 WP_011577285.1 DUF4006 family protein -
  HAC_RS01485 (Hac_0330) - 281353..281940 (+) 588 WP_011577286.1 hypothetical protein -
  HAC_RS01490 (Hac_0331) - 281953..282540 (+) 588 WP_011577287.1 hypothetical protein -
  HAC_RS01495 (Hac_0334) - 282892..283659 (+) 768 WP_011577288.1 hypothetical protein -
  HAC_RS01500 (Hac_0335) - 283656..284519 (-) 864 WP_011577289.1 menaquinone biosynthesis family protein -
  HAC_RS01505 (Hac_0336) recA 284618..285661 (+) 1044 WP_011577290.1 recombinase RecA Machinery gene
  HAC_RS01510 (Hac_0337) eno 285672..286952 (+) 1281 WP_011577291.1 phosphopyruvate hydratase -
  HAC_RS01515 (Hac_0338) - 286945..287220 (+) 276 WP_011577292.1 hypothetical protein -
  HAC_RS01520 (Hac_0339) - 287232..287828 (+) 597 WP_011577293.1 AMIN domain-containing protein -
  HAC_RS01525 (Hac_0340) - 287833..288321 (+) 489 WP_011577294.1 shikimate kinase -
  HAC_RS01530 (Hac_0341) - 288342..289298 (+) 957 WP_011577295.1 PDC sensor domain-containing protein -
  HAC_RS01535 (Hac_0342) - 289295..290398 (-) 1104 WP_011577296.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37709.51 Da        Isoelectric Point: 5.7176

>NTDB_id=26068 HAC_RS01505 WP_011577290.1 284618..285661(+) (recA) [Helicobacter acinonychis str. Sheeba]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKVKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
IILKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=26068 HAC_RS01505 WP_011577290.1 284618..285661(+) (recA) [Helicobacter acinonychis str. Sheeba]
ATGGCGATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAGGTAGAAAAGATTGACTCTATTTCTACGGGCTCGTTAGGGTTGGATTTGGCTTTAGGGA
TTGGGGGCGTTCCTAAAGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGTAAGACTACTTTAAGCTTGCACATT
ATTGCAGAATGCCAAAAAAATGGAGGCGTGTGTGCATTTATTGACGCTGAGCATGCCCTAGATGTGCATTATGCAAAAAG
GCTGGGCGTGGATACGGAAAATTTACTCGTTTCCCAACCAGATACCGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTAGATTCTGTGGCGGCTCTTACGCCTAAAGCTGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGACTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTGCACAAGATGAA
CACCACTCTCATTTTTATCAATCAAATAAGAATGAAAATCGGCATGATGGGTTATGGGAGCCCAGAGACCACAACCGGAG
GTAATGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATC
GGCAACAGGGCTAAAGTCAAAGTGGTTAAAAATAAAGTCGCTCCGCCTTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCAGAGAAAACGCTAAAGCTTTATTGAAAGAAGATAAAGCCCTAGCGAATGAA
ATCATTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCTTTACCGGATGAGCCCTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q17YV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

98.847

100

0.988
  recA Helicobacter pylori strain NCTC11637

98.847

100

0.988
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.963

94.524

0.746
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.769

93.66

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

95.677

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.741

93.372

0.614
  recA Acinetobacter baumannii D1279779

64.22

94.236

0.605
  recA Acinetobacter baylyi ADP1

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

62.202

96.83

0.602
  recA Pseudomonas stutzeri DSM 10701

60.819

98.559

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Glaesserella parasuis strain SC1401

60.976

94.524

0.576
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment