Detailed information NTG0026049

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: PATL_RS16715
• Genome accession: NC_008228
• Coordinates: 3908741..3909772 (-)
• Length: 343 a.a.
• NCBI ID: WP_011575995.1
• Uniprot ID: Q15QS3
• Organism: Paraglaciecola sp. T6c
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3903741..3914772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PATL_RS16695 (Patl_3255)	ccmB	3903765..3904433 (-)	669	WP_011575991.1	heme exporter protein CcmB	-
PATL_RS16700 (Patl_3256)	ccmA	3904430..3905059 (-)	630	WP_041713997.1	cytochrome c biogenesis heme-transporting ATPase CcmA	-
PATL_RS16705 (Patl_3257)	-	3905693..3908299 (+)	2607	WP_011575993.1	flagellar hook-length control protein FliK	-
PATL_RS16710 (Patl_3258)	-	3908331..3908663 (+)	333	WP_011575994.1	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	-
PATL_RS16715 (Patl_3259)	recA	3908741..3909772 (-)	1032	WP_011575995.1	recombinase RecA	Machinery gene
PATL_RS16720 (Patl_3260)	-	3910110..3910514 (-)	405	WP_011575996.1	GFA family protein	-
PATL_RS16725 (Patl_3261)	-	3910563..3910934 (-)	372	WP_011575997.1	DUF3224 domain-containing protein	-
PATL_RS16730 (Patl_3262)	-	3911039..3911551 (-)	513	WP_011575998.1	CinA family protein	-
PATL_RS16735 (Patl_3263)	mutS	3911681..3914350 (+)	2670	WP_011575999.1	DNA mismatch repair protein MutS	-

Sequence

Protein

• Length: 343 a.a.
• Molecular weight: 37023.66 Da
• Isoelectric Point: 5.5617

>NTDB_id=26049 PATL_RS16715 WP_011575995.1 3908741..3909772(-) (recA) [Paraglaciecola sp. T6c]
MDDNKTRALTAALGQIEKQFGKGAIMRLGDNQAMDIEAISTGSLTIDIALGIGGLPCGRVVEIYGPESSGKTTLTLQAIA
EAQKMGKTCAFVDAEHALDPIYAGKLGVNIDDLLVSQPDTGEQALEICDMLVRSGAVDVVVVDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKLTGNIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKDGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIMYGQGICKEAELIDLGVKQKLVEKAGAWYSYNGERIGQGKANVVKYLKEHTEMSNDIEQ
KLRAELLLKKTVKAEEPAKADEE

Nucleotide

• Length: 1032 bp

>NTDB_id=26049 PATL_RS16715 WP_011575995.1 3908741..3909772(-) (recA) [Paraglaciecola sp. T6c]
ATGGACGATAACAAAACTCGCGCGCTAACCGCCGCTCTTGGTCAAATCGAAAAGCAATTCGGTAAAGGCGCAATCATGCG
CTTGGGTGACAACCAAGCAATGGATATTGAAGCGATTTCTACTGGGTCTCTTACTATAGATATCGCCTTAGGCATAGGCG
GCTTACCGTGTGGACGTGTGGTTGAAATATACGGACCTGAATCATCAGGTAAAACCACGCTTACCTTACAAGCTATTGCT
GAAGCGCAAAAAATGGGCAAAACTTGCGCGTTTGTTGATGCTGAGCATGCGCTTGATCCAATTTATGCTGGTAAGTTGGG
TGTTAACATTGATGATTTGTTAGTGTCACAGCCGGACACTGGTGAACAAGCGTTAGAGATTTGTGACATGTTAGTTCGCT
CAGGCGCAGTTGATGTGGTTGTAGTCGATTCTGTAGCGGCATTGACACCAAAAGCGGAAATCGAAGGCGACATGGGAGAT
TCACACGTTGGCTTGCAAGCCCGTTTGATGTCACAAGCCTTGCGTAAGCTAACGGGTAACATTAAGCGTTCGAACACCTT
AGTCATATTCATTAACCAGATTCGTATGAAAATTGGTGTGATGTTTGGTTCACCTGAAACAACTACTGGTGGTAACGCAC
TTAAGTTTTACGCTTCAGTACGTTTAGATATTCGCCGTATCGGTGCGATTAAAGACGGTGATGAAGTAGTCGGTAATGAA
ACTCGGGTGAAAGTGGTTAAAAACAAAGTGGCTCCGCCATTTAAACAAGCTGAGTTCCAGATCATGTACGGTCAAGGGAT
CTGTAAAGAAGCCGAATTGATTGATTTAGGCGTTAAGCAGAAGCTTGTTGAGAAAGCGGGCGCTTGGTACAGCTACAATG
GCGAACGCATCGGTCAGGGTAAAGCTAACGTGGTTAAATACCTTAAAGAGCATACCGAGATGTCTAACGACATTGAGCAA
AAGCTGCGCGCTGAACTGCTATTAAAGAAAACCGTTAAAGCAGAAGAGCCTGCAAAAGCTGACGAAGAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: Q15QS3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Pseudomonas stutzeri DSM 10701	77.746	100	0.784
recA	Vibrio cholerae strain A1552	76.453	100	0.767
recA	Vibrio cholerae O1 biovar El Tor strain E7946	76.453	100	0.767
recA	Acinetobacter baylyi ADP1	73.178	100	0.732
recA	Acinetobacter baumannii D1279779	73.178	100	0.732
recA	Neisseria gonorrhoeae strain FA1090	73.846	94.752	0.7
recA	Neisseria gonorrhoeae MS11	73.846	94.752	0.7
recA	Neisseria gonorrhoeae MS11	73.846	94.752	0.7
recA	Glaesserella parasuis strain SC1401	72.531	94.461	0.685
recA	Ralstonia pseudosolanacearum GMI1000	74.598	90.671	0.676
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	62.682	100	0.627
recA	Helicobacter pylori strain NCTC11637	64.815	94.461	0.612
recA	Bacillus subtilis subsp. subtilis str. 168	65.625	93.294	0.612
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	62.575	97.376	0.609
recA	Helicobacter pylori 26695	64.198	94.461	0.606
recA	Streptococcus pneumoniae Rx1	60.058	100	0.601
recA	Streptococcus pneumoniae D39	60.058	100	0.601
recA	Streptococcus pneumoniae R6	60.058	100	0.601
recA	Streptococcus pneumoniae TIGR4	60.058	100	0.601
recA	Latilactobacillus sakei subsp. sakei 23K	59.824	99.417	0.595
recA	Streptococcus mutans UA159	58.551	100	0.589
recA	Streptococcus mitis SK321	59.412	99.125	0.589
recA	Streptococcus mitis NCTC 12261	60.671	95.627	0.58
recA	Streptococcus pyogenes NZ131	60.366	95.627	0.577
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60.991	94.169	0.574
recA	Lactococcus lactis subsp. cremoris KW2	58.951	94.461	0.557