Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   RXYL_RS07245 Genome accession   NC_008148
Coordinates   1446437..1447471 (+) Length   344 a.a.
NCBI ID   WP_011564402.1    Uniprot ID   Q1AW43
Organism   Rubrobacter xylanophilus DSM 9941     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1441437..1452471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RXYL_RS07230 (Rxyl_1420) - 1441471..1443114 (+) 1644 WP_011564399.1 ribonuclease J -
  RXYL_RS07235 (Rxyl_1421) - 1443181..1445391 (+) 2211 WP_011564400.1 DNA translocase FtsK -
  RXYL_RS07240 (Rxyl_1422) - 1445407..1446321 (+) 915 WP_011564401.1 helix-turn-helix domain-containing protein -
  RXYL_RS07245 (Rxyl_1423) recA 1446437..1447471 (+) 1035 WP_011564402.1 recombinase RecA Machinery gene
  RXYL_RS07250 (Rxyl_1424) - 1447484..1448107 (+) 624 WP_011564403.1 regulatory protein RecX -
  RXYL_RS07255 (Rxyl_1425) rny 1448171..1449715 (+) 1545 WP_011564404.1 ribonuclease Y -
  RXYL_RS16430 (Rxyl_1426) - 1449723..1450631 (+) 909 WP_011564405.1 ATP-binding protein -
  RXYL_RS07265 (Rxyl_1427) - 1450618..1451955 (+) 1338 WP_011564406.1 MiaB/RimO family radical SAM methylthiotransferase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37023.14 Da        Isoelectric Point: 5.5605

>NTDB_id=25989 RXYL_RS07245 WP_011564402.1 1446437..1447471(+) (recA) [Rubrobacter xylanophilus DSM 9941]
MALDKSKALDTAVSQIERQFGKGSIMRMGDRASQKVASISTGSLALDLALGVGGVPRGRIVEIFGPESSGKTTLALHIIA
EAQRAGGLAAFIDAEHALDPTYAEAIGVDLENLYFSQPDSGEQALEIADTLVRSGALDAVVIDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLSGSLSRSGTTAIFINQLREKIGVMFGSPETTPGGRALKFYASVRMDIRRIGALKAGNETVGNQ
TRVKIVKNKVAPPFKEVTFDIMYGEGISREGSLLDVGIEQGVIQKSGAWFAYGEERIGQGRENARKFLKEHPEIRDRITR
EVYERLGLGGEEREELEGRAEPVL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=25989 RXYL_RS07245 WP_011564402.1 1446437..1447471(+) (recA) [Rubrobacter xylanophilus DSM 9941]
ATGGCATTGGACAAGAGCAAGGCGCTAGACACCGCCGTATCGCAGATAGAGCGGCAGTTTGGCAAGGGTTCGATCATGCG
GATGGGCGACCGGGCCTCCCAGAAGGTCGCCTCCATCTCCACCGGCTCCCTGGCGCTCGACCTCGCCCTCGGGGTCGGGG
GGGTCCCCAGGGGGCGCATCGTGGAGATCTTCGGTCCGGAGTCCAGCGGAAAGACCACCCTCGCCCTGCACATCATCGCC
GAGGCCCAGAGGGCCGGCGGGCTCGCCGCGTTCATAGACGCCGAGCACGCCCTCGACCCCACCTACGCCGAGGCCATAGG
CGTCGACCTGGAGAACCTCTACTTCTCCCAGCCCGACAGCGGCGAGCAGGCCCTCGAGATCGCCGACACCCTCGTCCGCT
CCGGGGCCCTCGACGCCGTGGTCATAGACTCCGTGGCCGCGCTGGTCCCTAGAGCCGAGATAGAGGGTGAGATGGGGGAC
TCTCACGTGGGGCTTCAGGCCCGGCTTATGAGCCAGGCTCTGAGGAAGCTCTCGGGGTCGCTCTCGCGGTCGGGGACCAC
GGCGATCTTCATAAACCAGCTGCGGGAGAAGATAGGGGTGATGTTCGGCTCGCCGGAGACCACGCCGGGGGGTCGGGCGC
TGAAGTTCTACGCGAGCGTGCGGATGGACATCCGGCGCATCGGGGCGCTGAAGGCCGGCAACGAGACGGTGGGCAACCAG
ACGCGGGTGAAGATCGTCAAGAACAAGGTTGCGCCGCCGTTCAAGGAGGTCACCTTCGACATCATGTACGGGGAGGGGAT
CTCCAGGGAGGGGAGCCTGCTGGACGTGGGGATAGAGCAGGGTGTGATCCAGAAGAGCGGCGCCTGGTTCGCCTACGGGG
AGGAGAGGATCGGGCAGGGGCGCGAGAACGCCCGCAAGTTCCTCAAGGAGCACCCGGAGATACGCGACCGGATAACCCGC
GAGGTCTACGAGCGGCTGGGCCTCGGCGGGGAGGAGCGGGAGGAGCTGGAGGGCCGGGCCGAGCCGGTCCTGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1AW43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

66.462

94.477

0.628
  recA Streptococcus pneumoniae TIGR4

63.798

97.965

0.625
  recA Streptococcus pneumoniae Rx1

63.798

97.965

0.625
  recA Streptococcus pneumoniae D39

63.798

97.965

0.625
  recA Streptococcus pneumoniae R6

63.798

97.965

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.254

93.895

0.622
  recA Neisseria gonorrhoeae MS11

66.254

93.895

0.622
  recA Neisseria gonorrhoeae MS11

66.254

93.895

0.622
  recA Ralstonia pseudosolanacearum GMI1000

67.732

90.988

0.616
  recA Streptococcus mitis NCTC 12261

63.473

97.093

0.616
  recA Streptococcus mutans UA159

63.095

97.674

0.616
  recA Streptococcus mitis SK321

62.611

97.965

0.613
  recA Latilactobacillus sakei subsp. sakei 23K

62.611

97.965

0.613
  recA Helicobacter pylori strain NCTC11637

61.404

99.419

0.61
  recA Helicobacter pylori 26695

61.404

99.419

0.61
  recA Vibrio cholerae strain A1552

64.417

94.767

0.61
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.417

94.767

0.61
  recA Lactococcus lactis subsp. cremoris KW2

63.526

95.64

0.608
  recA Pseudomonas stutzeri DSM 10701

64.11

94.767

0.608
  recA Acinetobacter baylyi ADP1

63.497

94.767

0.602
  recA Streptococcus pyogenes NZ131

62.805

95.349

0.599
  recA Glaesserella parasuis strain SC1401

63.975

93.605

0.599
  recA Acinetobacter baumannii D1279779

63.19

94.767

0.599
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.354

93.605

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.631

96.221

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

95.64

0.581

Multiple sequence alignment