Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CWS99_RS06015 | Genome accession | NZ_CP025199 |
| Coordinates | 1403315..1404499 (-) | Length | 394 a.a. |
| NCBI ID | WP_004220446.1 | Uniprot ID | A0A174A7P4 |
| Organism | Bifidobacterium pseudocatenulatum strain 12 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1405076..1456432 | 1403315..1404499 | flank | 577 |
Gene organization within MGE regions
Location: 1403315..1456432
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWS99_RS06015 (CWS99_06070) | recA | 1403315..1404499 (-) | 1185 | WP_004220446.1 | recombinase RecA | Machinery gene |
| CWS99_RS06020 (CWS99_06075) | - | 1404755..1404988 (-) | 234 | WP_407711833.1 | DUF3046 domain-containing protein | - |
| CWS99_RS06025 (CWS99_06080) | - | 1405076..1405588 (-) | 513 | WP_004220462.1 | helix-turn-helix domain-containing protein | - |
| CWS99_RS06030 (CWS99_06085) | - | 1405649..1406215 (-) | 567 | WP_034881072.1 | CinA family protein | - |
| CWS99_RS06035 (CWS99_06090) | pgsA | 1406223..1406903 (-) | 681 | WP_034881071.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CWS99_RS06040 (CWS99_06095) | - | 1406971..1409769 (-) | 2799 | WP_033524128.1 | FtsK/SpoIIIE family DNA translocase | - |
| CWS99_RS06045 (CWS99_06100) | miaA | 1409967..1410950 (-) | 984 | WP_034881163.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| CWS99_RS06050 (CWS99_06105) | miaB | 1410997..1412451 (-) | 1455 | WP_065437437.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| CWS99_RS06055 (CWS99_06110) | - | 1412596..1413324 (+) | 729 | WP_033524063.1 | GTP pyrophosphokinase family protein | - |
| CWS99_RS06060 (CWS99_06115) | - | 1413311..1414306 (-) | 996 | WP_004220474.1 | DMT family transporter | - |
| CWS99_RS06065 (CWS99_06120) | - | 1414524..1415357 (-) | 834 | WP_004220475.1 | Bax inhibitor-1/YccA family protein | - |
| CWS99_RS06070 (CWS99_06125) | - | 1415513..1416337 (-) | 825 | WP_126016444.1 | DUF5067 domain-containing protein | - |
| CWS99_RS06075 (CWS99_06130) | - | 1416581..1417852 (+) | 1272 | WP_171025369.1 | sensor histidine kinase | - |
| CWS99_RS06080 (CWS99_06135) | - | 1417840..1418541 (+) | 702 | WP_004220482.1 | response regulator transcription factor | - |
| CWS99_RS06085 (CWS99_06140) | - | 1418592..1420703 (+) | 2112 | WP_117754556.1 | DUF262 domain-containing protein | - |
| CWS99_RS06090 (CWS99_06145) | - | 1420748..1421407 (-) | 660 | WP_033524130.1 | response regulator transcription factor | - |
| CWS99_RS06095 (CWS99_06150) | - | 1421407..1422756 (-) | 1350 | WP_065437475.1 | sensor histidine kinase | - |
| CWS99_RS06100 (CWS99_06155) | - | 1422990..1423988 (+) | 999 | WP_004220489.1 | ABC transporter ATP-binding protein | - |
| CWS99_RS06105 (CWS99_06160) | - | 1424018..1425277 (+) | 1260 | WP_065439137.1 | ABC transporter permease | - |
| CWS99_RS06110 (CWS99_06165) | - | 1425264..1426550 (+) | 1287 | WP_055063494.1 | ABC transporter permease | - |
| CWS99_RS06115 (CWS99_06170) | - | 1426603..1427661 (-) | 1059 | WP_226562953.1 | AraC family transcriptional regulator | - |
| CWS99_RS06120 (CWS99_06175) | - | 1427809..1428456 (+) | 648 | WP_034881062.1 | sugar O-acetyltransferase | - |
| CWS99_RS06125 (CWS99_06180) | - | 1428484..1429863 (+) | 1380 | WP_055063611.1 | MATE family efflux transporter | - |
| CWS99_RS06130 (CWS99_06185) | acnA | 1429952..1432654 (-) | 2703 | WP_065437441.1 | aconitate hydratase AcnA | - |
| CWS99_RS06135 (CWS99_06190) | - | 1432724..1435210 (-) | 2487 | WP_126016446.1 | HAD-IC family P-type ATPase | - |
| CWS99_RS06140 (CWS99_06195) | - | 1435347..1435928 (-) | 582 | WP_065441126.1 | sugar ABC transporter substrate-binding protein | - |
| CWS99_RS06145 (CWS99_06200) | - | 1435931..1437196 (-) | 1266 | WP_117750079.1 | class I SAM-dependent RNA methyltransferase | - |
| CWS99_RS06150 (CWS99_06205) | - | 1437196..1437942 (-) | 747 | WP_004220512.1 | DUF3159 domain-containing protein | - |
| CWS99_RS06155 (CWS99_06210) | - | 1437969..1438799 (-) | 831 | WP_118262086.1 | DUF3710 domain-containing protein | - |
| CWS99_RS06160 (CWS99_06215) | - | 1438917..1439777 (-) | 861 | WP_004220515.1 | exodeoxyribonuclease III | - |
| CWS99_RS06165 (CWS99_06220) | - | 1439858..1441867 (-) | 2010 | WP_004220518.1 | dipeptide ABC transporter ATP-binding protein | - |
| CWS99_RS06170 (CWS99_06225) | - | 1441888..1442853 (-) | 966 | WP_022245427.1 | ABC transporter permease | - |
| CWS99_RS06175 (CWS99_06230) | - | 1442871..1443797 (-) | 927 | WP_004220521.1 | ABC transporter permease | - |
| CWS99_RS06180 (CWS99_06235) | - | 1444096..1445754 (-) | 1659 | WP_126016448.1 | ABC transporter substrate-binding protein | - |
| CWS99_RS06185 (CWS99_06240) | - | 1445891..1446817 (-) | 927 | WP_004220529.1 | tyrosine recombinase XerC | - |
| CWS99_RS06190 (CWS99_06245) | - | 1446996..1447253 (+) | 258 | WP_004220530.1 | DUF6725 family protein | - |
| CWS99_RS06195 (CWS99_06250) | - | 1447258..1448295 (-) | 1038 | WP_233432625.1 | prephenate dehydrogenase | - |
| CWS99_RS06200 (CWS99_06255) | - | 1448292..1449272 (-) | 981 | WP_004220532.1 | prephenate dehydratase domain-containing protein | - |
| CWS99_RS06205 (CWS99_06260) | - | 1449340..1449894 (-) | 555 | WP_226558529.1 | hypothetical protein | - |
| CWS99_RS06210 (CWS99_06265) | typA | 1449990..1451921 (-) | 1932 | WP_004220539.1 | translational GTPase TypA | - |
| CWS99_RS06215 (CWS99_06270) | - | 1452139..1453497 (-) | 1359 | WP_126016450.1 | MFS transporter | - |
| CWS99_RS06220 (CWS99_06275) | - | 1453588..1454385 (-) | 798 | WP_004220552.1 | NUDIX hydrolase | - |
| CWS99_RS06225 (CWS99_06280) | - | 1454552..1455391 (-) | 840 | WP_004220555.1 | ParA family protein | - |
| CWS99_RS06230 (CWS99_06285) | xerD | 1455479..1456432 (-) | 954 | WP_022245435.1 | site-specific tyrosine recombinase XerD | - |
Sequence
Protein
Download Length: 394 a.a. Molecular weight: 41544.04 Da Isoelectric Point: 5.6001
>NTDB_id=258736 CWS99_RS06015 WP_004220446.1 1403315..1404499(-) (recA) [Bifidobacterium pseudocatenulatum strain 12]
MAQTSAAKGAAQNKSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPEQDVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRM
DIRRIQTIKNGDEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYGGDQLGQGRE
NVRQFLKDNPELTEEIENKVKAEFGLIEPTDQFAEDGNEASASNATSEEKAKADAGKPEAAKGAAKASKSAGKA
MAQTSAAKGAAQNKSANGIDPRRQAALDTALAQVEKSFGKGSAMRLGDRPEQDVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKNGGVAAFIDAEHALDPVYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYSSVRM
DIRRIQTIKNGDEAVGNRTKVKVVKNKMAPPFKTAEFDVLYGEGISKEGSVLDMALQVNVVKKSGSWFTYGGDQLGQGRE
NVRQFLKDNPELTEEIENKVKAEFGLIEPTDQFAEDGNEASASNATSEEKAKADAGKPEAAKGAAKASKSAGKA
Nucleotide
Download Length: 1185 bp
>NTDB_id=258736 CWS99_RS06015 WP_004220446.1 1403315..1404499(-) (recA) [Bifidobacterium pseudocatenulatum strain 12]
ATGGCACAGACGAGCGCGGCAAAGGGAGCCGCACAGAACAAGTCCGCGAACGGCATCGACCCGCGTCGTCAGGCTGCGCT
TGATACGGCGCTCGCGCAGGTCGAGAAGAGTTTCGGCAAGGGATCGGCCATGCGATTGGGCGATCGTCCCGAGCAGGATG
TCGAGGTGATTCCTACTGGATCGCTGGCATTGGATATGGCATTGGGTATCGGCGGCCTGCCGAAGGGCCGTATCGTGGAG
ATTTATGGTCCGGAATCCTCCGGCAAGACCACACTGGCGTTGCATGTGGTGGCCAATGCCCAGAAAAACGGTGGCGTCGC
CGCGTTCATCGATGCGGAACATGCGCTTGACCCGGTCTATGCGCGCAAGCTCGGCGTCGATACTGATTCGTTGATTGTTT
CCCAACCTGATAACGGCGAGCAGGCGCTGGAAATCGCGGATATGCTGATTCGTTCTGGTGCGCTTGACGTGATCGTCATC
GATTCAGTGGCTGCACTGGTGCCGAAGGCCGAAATCGAAGGTGAAATGGGCGACAGTCATGTCGGTTTGCAGGCAAGACT
GATGAGCCAGGCATTGCGTAAGATGACTGGCGCTTTGGCTCAGGCGGGCACCACCGCCATTTTCATCAACCAGCTTCGAG
AGAAGATCGGTGTGTTCTTCGGCAATCCGGAAACGACCACCGGCGGCAAGGCGTTGAAGTTCTACTCGTCCGTCCGCATG
GATATTCGACGTATCCAGACCATCAAGAATGGTGATGAGGCTGTAGGCAATCGCACCAAGGTCAAGGTCGTCAAGAACAA
GATGGCTCCGCCGTTCAAGACCGCTGAATTCGACGTGTTGTACGGCGAGGGCATTTCCAAGGAAGGTTCCGTACTTGACA
TGGCGTTGCAGGTCAATGTCGTGAAGAAGTCCGGATCATGGTTCACCTATGGTGGCGACCAACTGGGTCAAGGCCGTGAG
AACGTACGCCAATTCTTGAAAGACAATCCGGAGCTTACCGAAGAGATCGAGAATAAGGTGAAGGCCGAGTTTGGTCTCAT
TGAGCCCACCGACCAATTTGCCGAAGATGGTAATGAGGCTTCTGCGTCTAATGCCACAAGCGAGGAGAAGGCGAAAGCGG
ATGCTGGCAAGCCGGAAGCAGCCAAAGGCGCGGCAAAGGCTTCCAAGTCAGCCGGCAAGGCGTGA
ATGGCACAGACGAGCGCGGCAAAGGGAGCCGCACAGAACAAGTCCGCGAACGGCATCGACCCGCGTCGTCAGGCTGCGCT
TGATACGGCGCTCGCGCAGGTCGAGAAGAGTTTCGGCAAGGGATCGGCCATGCGATTGGGCGATCGTCCCGAGCAGGATG
TCGAGGTGATTCCTACTGGATCGCTGGCATTGGATATGGCATTGGGTATCGGCGGCCTGCCGAAGGGCCGTATCGTGGAG
ATTTATGGTCCGGAATCCTCCGGCAAGACCACACTGGCGTTGCATGTGGTGGCCAATGCCCAGAAAAACGGTGGCGTCGC
CGCGTTCATCGATGCGGAACATGCGCTTGACCCGGTCTATGCGCGCAAGCTCGGCGTCGATACTGATTCGTTGATTGTTT
CCCAACCTGATAACGGCGAGCAGGCGCTGGAAATCGCGGATATGCTGATTCGTTCTGGTGCGCTTGACGTGATCGTCATC
GATTCAGTGGCTGCACTGGTGCCGAAGGCCGAAATCGAAGGTGAAATGGGCGACAGTCATGTCGGTTTGCAGGCAAGACT
GATGAGCCAGGCATTGCGTAAGATGACTGGCGCTTTGGCTCAGGCGGGCACCACCGCCATTTTCATCAACCAGCTTCGAG
AGAAGATCGGTGTGTTCTTCGGCAATCCGGAAACGACCACCGGCGGCAAGGCGTTGAAGTTCTACTCGTCCGTCCGCATG
GATATTCGACGTATCCAGACCATCAAGAATGGTGATGAGGCTGTAGGCAATCGCACCAAGGTCAAGGTCGTCAAGAACAA
GATGGCTCCGCCGTTCAAGACCGCTGAATTCGACGTGTTGTACGGCGAGGGCATTTCCAAGGAAGGTTCCGTACTTGACA
TGGCGTTGCAGGTCAATGTCGTGAAGAAGTCCGGATCATGGTTCACCTATGGTGGCGACCAACTGGGTCAAGGCCGTGAG
AACGTACGCCAATTCTTGAAAGACAATCCGGAGCTTACCGAAGAGATCGAGAATAAGGTGAAGGCCGAGTTTGGTCTCAT
TGAGCCCACCGACCAATTTGCCGAAGATGGTAATGAGGCTTCTGCGTCTAATGCCACAAGCGAGGAGAAGGCGAAAGCGG
ATGCTGGCAAGCCGGAAGCAGCCAAAGGCGCGGCAAAGGCTTCCAAGTCAGCCGGCAAGGCGTGA
Similar proteins
Only experimentally validated proteins are listed.