Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CWR55_RS06310 | Genome accession | NZ_CP025046 |
| Coordinates | 1321144..1322190 (+) | Length | 348 a.a. |
| NCBI ID | WP_021364420.1 | Uniprot ID | A0A9X8RFQ1 |
| Organism | Clostridioides difficile strain W0022a | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1295096..1359930 | 1321144..1322190 | within | 0 |
Gene organization within MGE regions
Location: 1295096..1359930
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWR55_RS06185 (CWR55_06185) | rimP | 1297512..1297973 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CWR55_RS06190 (CWR55_06190) | nusA | 1298003..1299157 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CWR55_RS06195 (CWR55_06195) | rnpM | 1299164..1299445 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CWR55_RS06200 (CWR55_06200) | - | 1299435..1299746 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CWR55_RS06205 (CWR55_06205) | infB | 1299768..1301708 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CWR55_RS06210 (CWR55_06210) | rbfA | 1301751..1302131 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CWR55_RS06215 (CWR55_06215) | - | 1302112..1302789 (+) | 678 | Protein_1161 | DHH family phosphoesterase | - |
| CWR55_RS06225 (CWR55_06225) | tnpB | 1303429..1304547 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CWR55_RS06230 (CWR55_06230) | - | 1304665..1304970 (+) | 306 | Protein_1163 | DHH family phosphoesterase | - |
| CWR55_RS06235 (CWR55_06235) | truB | 1304983..1305888 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CWR55_RS06240 (CWR55_06240) | - | 1306019..1306948 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CWR55_RS06250 (CWR55_06250) | rpsO | 1307052..1307309 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CWR55_RS06255 (CWR55_06255) | - | 1307549..1308394 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CWR55_RS06260 (CWR55_06260) | pnp | 1308519..1310630 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CWR55_RS06265 (CWR55_06265) | - | 1310896..1311639 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CWR55_RS06270 (CWR55_06270) | - | 1311797..1313044 (+) | 1248 | WP_009902409.1 | M16 family metallopeptidase | - |
| CWR55_RS06275 (CWR55_06275) | - | 1313079..1313324 (+) | 246 | WP_021364423.1 | YlmC/YmxH family sporulation protein | - |
| CWR55_RS06280 (CWR55_06280) | dapG | 1313334..1314557 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CWR55_RS06285 (CWR55_06285) | - | 1314670..1315404 (+) | 735 | WP_021364422.1 | ClpP family protease | - |
| CWR55_RS06290 (CWR55_06290) | - | 1315527..1317938 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| CWR55_RS06295 (CWR55_06295) | mnmH | 1317941..1318999 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CWR55_RS06300 (CWR55_06300) | rimO | 1318993..1320327 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CWR55_RS06305 (CWR55_06305) | pgsA | 1320314..1320856 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CWR55_RS06310 (CWR55_06310) | recA | 1321144..1322190 (+) | 1047 | WP_021364420.1 | recombinase RecA | Machinery gene |
| CWR55_RS06315 (CWR55_06315) | rny | 1322366..1323907 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CWR55_RS06320 (CWR55_06320) | - | 1324542..1326323 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CWR55_RS06325 (CWR55_06325) | lepB | 1326405..1326935 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| CWR55_RS06330 (CWR55_06330) | - | 1326975..1327799 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| CWR55_RS06335 (CWR55_06335) | - | 1328056..1328964 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CWR55_RS06340 (CWR55_06340) | purB | 1329108..1330553 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| CWR55_RS06345 (CWR55_06345) | - | 1330864..1331316 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CWR55_RS06350 (CWR55_06350) | - | 1331728..1333305 (+) | 1578 | WP_021364419.1 | PTS transporter subunit EIIC | - |
| CWR55_RS06355 (CWR55_06355) | - | 1333453..1334205 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| CWR55_RS06360 (CWR55_06360) | - | 1334338..1335684 (+) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| CWR55_RS06365 (CWR55_06365) | - | 1335796..1336992 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CWR55_RS06370 (CWR55_06370) | galT | 1337377..1338327 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| CWR55_RS06375 (CWR55_06375) | - | 1338488..1339240 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CWR55_RS06380 (CWR55_06380) | - | 1339332..1340108 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CWR55_RS06385 (CWR55_06385) | - | 1340423..1342321 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CWR55_RS06390 (CWR55_06390) | - | 1342449..1343570 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| CWR55_RS06395 (CWR55_06395) | - | 1343769..1344101 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CWR55_RS06400 (CWR55_06400) | - | 1344088..1345146 (+) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| CWR55_RS06405 (CWR55_06405) | - | 1345139..1346209 (+) | 1071 | WP_021364425.1 | DUF4097 family beta strand repeat-containing protein | - |
| CWR55_RS06410 (CWR55_06410) | - | 1346311..1346847 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CWR55_RS06415 (CWR55_06415) | - | 1346963..1347670 (+) | 708 | WP_009902422.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CWR55_RS06420 (CWR55_06420) | - | 1347672..1348388 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CWR55_RS06425 (CWR55_06425) | - | 1348390..1349148 (+) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CWR55_RS06430 (CWR55_06430) | - | 1349283..1350671 (+) | 1389 | WP_021364432.1 | two-component system sensor histidine kinase | - |
| CWR55_RS06435 (CWR55_06435) | - | 1350747..1351568 (-) | 822 | WP_021364435.1 | pyridoxamine kinase | - |
| CWR55_RS06440 (CWR55_06440) | - | 1351819..1352973 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CWR55_RS06445 (CWR55_06445) | - | 1353156..1353356 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CWR55_RS06450 (CWR55_06450) | - | 1353777..1354205 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CWR55_RS06455 (CWR55_06455) | - | 1354348..1355103 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CWR55_RS06465 (CWR55_06465) | - | 1355804..1356310 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CWR55_RS06470 (CWR55_06470) | - | 1356392..1356712 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CWR55_RS06475 (CWR55_06475) | - | 1356881..1357078 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CWR55_RS06480 (CWR55_06480) | - | 1357183..1357623 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CWR55_RS06485 (CWR55_06485) | - | 1357872..1358315 (+) | 444 | WP_003438413.1 | phage tail terminator family protein | - |
| CWR55_RS06490 (CWR55_06490) | - | 1358320..1359384 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CWR55_RS06495 (CWR55_06495) | - | 1359398..1359826 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37389.74 Da Isoelectric Point: 4.8236
>NTDB_id=257674 CWR55_RS06310 WP_021364420.1 1321144..1322190(+) (recA) [Clostridioides difficile strain W0022a]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=257674 CWR55_RS06310 WP_021364420.1 1321144..1322190(+) (recA) [Clostridioides difficile strain W0022a]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.