Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CWR56_RS06175 | Genome accession | NZ_CP025045 |
| Coordinates | 1320328..1321374 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain W0023a | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1291956..1369168 | 1320328..1321374 | within | 0 |
Gene organization within MGE regions
Location: 1291956..1369168
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWR56_RS06055 (CWR56_06055) | acd | 1292031..1293854 (+) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
| CWR56_RS06060 (CWR56_06060) | - | 1294069..1298367 (+) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| CWR56_RS06065 (CWR56_06065) | rimP | 1298571..1299032 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CWR56_RS06070 (CWR56_06070) | nusA | 1299062..1300216 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CWR56_RS06075 (CWR56_06075) | rnpM | 1300223..1300504 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CWR56_RS06080 (CWR56_06080) | - | 1300494..1300805 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CWR56_RS06085 (CWR56_06085) | infB | 1300827..1302767 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CWR56_RS06090 (CWR56_06090) | rbfA | 1302810..1303190 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CWR56_RS06095 (CWR56_06095) | - | 1303171..1304154 (+) | 984 | WP_003438308.1 | DHH family phosphoesterase | - |
| CWR56_RS06100 (CWR56_06100) | truB | 1304167..1305072 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CWR56_RS06105 (CWR56_06105) | - | 1305203..1306132 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CWR56_RS06115 (CWR56_06115) | rpsO | 1306236..1306493 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CWR56_RS06120 (CWR56_06120) | - | 1306733..1307578 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CWR56_RS06125 (CWR56_06125) | pnp | 1307703..1309814 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CWR56_RS06130 (CWR56_06130) | - | 1310080..1310823 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CWR56_RS06135 (CWR56_06135) | - | 1310981..1312228 (+) | 1248 | WP_003438321.1 | M16 family metallopeptidase | - |
| CWR56_RS06140 (CWR56_06140) | - | 1312263..1312508 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CWR56_RS06145 (CWR56_06145) | dapG | 1312518..1313741 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CWR56_RS06150 (CWR56_06150) | - | 1313854..1314588 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CWR56_RS06155 (CWR56_06155) | - | 1314711..1317122 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| CWR56_RS06160 (CWR56_06160) | mnmH | 1317125..1318183 (+) | 1059 | WP_003438330.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CWR56_RS06165 (CWR56_06165) | rimO | 1318177..1319511 (+) | 1335 | WP_003438333.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CWR56_RS06170 (CWR56_06170) | pgsA | 1319498..1320040 (+) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CWR56_RS06175 (CWR56_06175) | recA | 1320328..1321374 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CWR56_RS06180 (CWR56_06180) | rny | 1321550..1323091 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CWR56_RS06185 (CWR56_06185) | - | 1323405..1325741 (+) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| CWR56_RS06190 (CWR56_06190) | - | 1326123..1327904 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CWR56_RS06195 (CWR56_06195) | lepB | 1327986..1328516 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| CWR56_RS06200 (CWR56_06200) | - | 1328556..1329380 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| CWR56_RS06205 (CWR56_06205) | - | 1329637..1330545 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CWR56_RS06210 (CWR56_06210) | purB | 1330689..1332134 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| CWR56_RS06215 (CWR56_06215) | - | 1332445..1332897 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CWR56_RS06220 (CWR56_06220) | - | 1333232..1334428 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CWR56_RS06225 (CWR56_06225) | galT | 1334813..1335763 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| CWR56_RS06230 (CWR56_06230) | - | 1335924..1336676 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CWR56_RS06235 (CWR56_06235) | - | 1336768..1337544 (-) | 777 | WP_003438370.1 | 3'-5' exonuclease | - |
| CWR56_RS06240 (CWR56_06240) | - | 1337859..1339757 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CWR56_RS06245 (CWR56_06245) | - | 1339885..1341006 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| CWR56_RS06250 (CWR56_06250) | - | 1341205..1341537 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CWR56_RS06255 (CWR56_06255) | - | 1341524..1342582 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| CWR56_RS06260 (CWR56_06260) | - | 1342575..1343645 (+) | 1071 | WP_003438380.1 | DUF4097 family beta strand repeat-containing protein | - |
| CWR56_RS06265 (CWR56_06265) | - | 1343747..1344283 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CWR56_RS06270 (CWR56_06270) | - | 1344399..1345106 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CWR56_RS06275 (CWR56_06275) | - | 1345108..1345824 (+) | 717 | WP_003438387.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CWR56_RS06280 (CWR56_06280) | - | 1345826..1346584 (+) | 759 | WP_021363441.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CWR56_RS06285 (CWR56_06285) | - | 1346719..1348107 (+) | 1389 | WP_021368953.1 | two-component system sensor histidine kinase | - |
| CWR56_RS06290 (CWR56_06290) | - | 1348183..1349004 (-) | 822 | WP_003438396.1 | pyridoxamine kinase | - |
| CWR56_RS06295 (CWR56_06295) | - | 1349255..1350409 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CWR56_RS06300 (CWR56_06300) | - | 1350592..1350792 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CWR56_RS06305 (CWR56_06305) | - | 1351213..1351641 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CWR56_RS06310 (CWR56_06310) | - | 1351784..1352539 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CWR56_RS06320 (CWR56_06320) | - | 1353240..1353746 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CWR56_RS06325 (CWR56_06325) | - | 1353828..1354148 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CWR56_RS06330 (CWR56_06330) | - | 1354317..1354514 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CWR56_RS06335 (CWR56_06335) | - | 1354619..1355059 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CWR56_RS06340 (CWR56_06340) | - | 1355308..1355751 (+) | 444 | WP_003438413.1 | phage tail terminator family protein | - |
| CWR56_RS06345 (CWR56_06345) | - | 1355756..1356820 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CWR56_RS06350 (CWR56_06350) | - | 1356834..1357262 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CWR56_RS06355 (CWR56_06355) | - | 1357376..1357822 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| CWR56_RS06360 (CWR56_06360) | - | 1357849..1358016 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CWR56_RS06365 (CWR56_06365) | - | 1358016..1360469 (+) | 2454 | WP_003438437.1 | hypothetical protein | - |
| CWR56_RS06370 (CWR56_06370) | - | 1360469..1360891 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| CWR56_RS06375 (CWR56_06375) | - | 1361173..1362702 (+) | 1530 | WP_003438440.1 | NlpC/P60 family protein | - |
| CWR56_RS06380 (CWR56_06380) | - | 1362718..1363044 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| CWR56_RS06385 (CWR56_06385) | - | 1363044..1363472 (+) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| CWR56_RS06390 (CWR56_06390) | - | 1363465..1364517 (+) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| CWR56_RS06395 (CWR56_06395) | - | 1364514..1365212 (+) | 699 | WP_003438451.1 | putative phage tail protein | - |
| CWR56_RS06400 (CWR56_06400) | - | 1365213..1366196 (+) | 984 | WP_003438452.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=257657 CWR56_RS06175 WP_003428218.1 1320328..1321374(+) (recA) [Clostridioides difficile strain W0023a]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=257657 CWR56_RS06175 WP_003428218.1 1320328..1321374(+) (recA) [Clostridioides difficile strain W0023a]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.