Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CWR52_RS17400 Genome accession   NZ_CP025034
Coordinates   3602367..3603425 (+) Length   352 a.a.
NCBI ID   WP_104950255.1    Uniprot ID   -
Organism   Enterobacter sp. SGAir0187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3597367..3608425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWR52_RS17375 (CWR52_17525) mltB 3597852..3598952 (+) 1101 WP_201268141.1 lytic murein transglycosylase B -
  CWR52_RS17380 (CWR52_17530) - 3599247..3599900 (+) 654 WP_104950251.1 metal ABC transporter ATP-binding protein -
  CWR52_RS17385 (CWR52_17535) - 3599897..3600757 (+) 861 WP_104950252.1 metal ABC transporter permease -
  CWR52_RS17390 (CWR52_17540) - 3600772..3601650 (+) 879 WP_104950253.1 metal ABC transporter substrate-binding protein -
  CWR52_RS17395 (CWR52_17545) pncC 3601780..3602277 (+) 498 WP_104950254.1 nicotinamide-nucleotide amidase -
  CWR52_RS17400 (CWR52_17550) recA 3602367..3603425 (+) 1059 WP_104950255.1 recombinase RecA Machinery gene
  CWR52_RS17405 (CWR52_17555) recX 3603495..3603995 (+) 501 WP_032640869.1 recombination regulator RecX -
  CWR52_RS17410 (CWR52_17560) alaS 3604127..3606754 (+) 2628 WP_104950256.1 alanine--tRNA ligase -
  CWR52_RS17415 (CWR52_17565) csrA 3606996..3607181 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37880.34 Da        Isoelectric Point: 4.8134

>NTDB_id=257527 CWR52_RS17400 WP_104950255.1 3602367..3603425(+) (recA) [Enterobacter sp. SGAir0187]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSKPDFVVDAADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=257527 CWR52_RS17400 WP_104950255.1 3602367..3603425(+) (recA) [Enterobacter sp. SGAir0187]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTACCATGGATGTGGAAACGATCTCCACCGGTTCGCTTTCTCTGGATATCGCGCTGGGCG
CGGGCGGCCTGCCAATGGGTCGTATCGTAGAGATCTACGGGCCAGAATCCTCCGGTAAAACTACCCTGACGCTGCAGGTG
ATTGCTGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGATCCTGTTTATGCGCGTAA
GCTGGGCGTGGACATCGACAACCTGCTGTGTTCTCAGCCGGACACCGGTGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CGCGCTCCGGTGCGGTTGACGTTATCGTGGTTGACTCCGTTGCCGCACTGACGCCAAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCGAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACAACCGGGGGTA
ACGCCCTGAAATTCTACGCGTCTGTCCGTCTGGATATCCGCCGTATCGGTGCGGTGAAAGAGGGTGAAAACGTCGTCGGT
AGCGAAACCCGCGTCAAGGTTGTGAAGAACAAAATCGCTGCGCCGTTCAAGCAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGTATTAACTTCTTCGGTGAGTTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCCTGGTACAGCT
ACAACGGTGACAAGATTGGTCAGGGTAAAGCGAATGCCATCTCCTGGCTGAAAGAGAACCCGGCTGCGGCGAAAGAGATT
GAGAAGAAGGTGCGCGAGCTTCTGCTGAACAACCAGGACTCCAAACCTGATTTCGTAGTCGATGCTGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.196

94.034

0.801
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.196

94.034

0.801
  recA Pseudomonas stutzeri DSM 10701

72.832

98.295

0.716
  recA Acinetobacter baumannii D1279779

70.774

99.148

0.702
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

69.075

98.295

0.679
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.721

95.739

0.591
  recA Helicobacter pylori 26695

61.424

95.739

0.588
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

92.045

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus mitis SK321

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.602

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557

Multiple sequence alignment