Detailed information NTG0025707

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: SDEN_RS06275
• Genome accession: NC_007954
• Coordinates: 1406529..1407590 (+)
• Length: 353 a.a.
• NCBI ID: WP_011495653.1
• Uniprot ID: Q12PY2
• Organism: Shewanella denitrificans OS217
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1401529..1412590

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDEN_RS06265 (Sden_1206)	-	1403088..1403435 (-)	348	WP_011495651.1	hypothetical protein	-
SDEN_RS06270 (Sden_1207)	mutS	1403468..1406056 (-)	2589	WP_011495652.1	DNA mismatch repair protein MutS	-
SDEN_RS06275 (Sden_1208)	recA	1406529..1407590 (+)	1062	WP_011495653.1	recombinase RecA	Machinery gene
SDEN_RS06280 (Sden_1209)	-	1407714..1408436 (-)	723	WP_011495654.1	LytR/AlgR family response regulator transcription factor	-
SDEN_RS06285 (Sden_1210)	-	1408500..1409531 (-)	1032	WP_041405710.1	sensor histidine kinase	-
SDEN_RS06290 (Sden_1211)	-	1409539..1410261 (-)	723	WP_011495656.1	hypothetical protein	-
SDEN_RS06295 (Sden_1212)	-	1410474..1411508 (+)	1035	WP_011495657.1	alpha/beta hydrolase	-

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 37785.17 Da
• Isoelectric Point: 4.8683

>NTDB_id=25707 SDEN_RS06275 WP_011495653.1 1406529..1407590(+) (recA) [Shewanella denitrificans OS217]
MKADPNKEKALAAVLSQIEKQFGKGSIMKLGEDRTMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVG
NETRVKVVKNKIAAPFKQAEFQILYGQGINRTGELVDLGVAHKLVEKAGAWYSYKGDKIGQGRANAGRYLTENPAIAQEI
DTLLREMLLNSNAPKESAADVDDNVDPETGEVF

Nucleotide

• Length: 1062 bp

>NTDB_id=25707 SDEN_RS06275 WP_011495653.1 1406529..1407590(+) (recA) [Shewanella denitrificans OS217]
ATGAAAGCTGATCCAAATAAAGAGAAGGCACTTGCTGCGGTACTCAGTCAAATTGAAAAACAGTTTGGTAAAGGTTCAAT
CATGAAGCTTGGTGAAGACCGCACCATGGATGTTGAGACCATCTCTACGGGTTCACTTTCATTGGACGTAGCCTTAGGCG
CTGGCGGTTTACCTATGGGGCGTATCGTTGAGATATATGGCCCAGAATCATCGGGTAAAACCACCTTAACATTGGAAGTG
ATTGCAGCAGCTCAACGTGAAGGTAAAACCTGTGCCTTTATCGATGCTGAGCACGCATTAGACCCAATTTACGCCAAAAA
GTTAGGCGTAGATATTGATAACTTATTGTGTTCACAGCCTGATACCGGGGAGCAAGCTCTTGAAATTTGTGATGCATTAA
CTCGCTCTGGCGCGGTTGATGTTATCGTTGTCGATTCGGTTGCAGCGCTAACACCAAAAGCTGAAATTGAAGGTGAAATT
GGTGACTCACATATGGGCCTAGCAGCGCGTATGATGAGCCAAGCAATGCGTAAGCTTGCTGGTAACTTGAAGCAATCCAA
TACCTTACTTATTTTTATTAACCAAATTCGTATGAAAATTGGCGTGATGTTTGGTAACCCAGAAACCACAACTGGCGGTA
ACGCACTTAAGTTTTATGCATCAGTGCGTTTAGATATTCGCCGCACTGGCGCCATTAAAGACGGCGACGAAGTAGTGGGT
AACGAAACCCGCGTTAAAGTGGTTAAAAACAAAATTGCTGCGCCCTTTAAGCAAGCTGAATTCCAAATTCTTTATGGTCA
AGGTATTAACCGTACTGGTGAGCTAGTTGATTTGGGGGTGGCCCATAAACTAGTTGAAAAAGCCGGTGCTTGGTACAGCT
ATAAAGGTGATAAAATTGGTCAAGGCCGCGCCAATGCCGGTCGTTACTTAACTGAAAATCCTGCAATTGCTCAAGAAATC
GATACTCTTTTGCGTGAAATGTTATTGAACTCAAATGCACCAAAAGAATCGGCTGCAGACGTTGATGACAATGTTGACCC
AGAAACGGGCGAAGTATTTTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

3D structure

• AlphaFold DB: Q12PY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	83.333	96.884	0.807
recA	Vibrio cholerae O1 biovar El Tor strain E7946	83.333	96.884	0.807
recA	Pseudomonas stutzeri DSM 10701	71.884	97.734	0.703
recA	Acinetobacter baumannii D1279779	70.145	97.734	0.686
recA	Acinetobacter baylyi ADP1	71.513	95.467	0.683
recA	Glaesserella parasuis strain SC1401	68.895	97.45	0.671
recA	Neisseria gonorrhoeae MS11	65.988	97.45	0.643
recA	Neisseria gonorrhoeae MS11	65.988	97.45	0.643
recA	Neisseria gonorrhoeae strain FA1090	65.988	97.45	0.643
recA	Ralstonia pseudosolanacearum GMI1000	71.704	88.102	0.632
recA	Streptococcus mitis NCTC 12261	59.943	99.717	0.598
recA	Streptococcus mitis SK321	59.659	99.717	0.595
recA	Streptococcus pneumoniae R6	63.158	91.501	0.578
recA	Streptococcus pneumoniae TIGR4	63.158	91.501	0.578
recA	Streptococcus pneumoniae D39	63.158	91.501	0.578
recA	Streptococcus pneumoniae Rx1	63.158	91.501	0.578
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.261	94.334	0.578
recA	Latilactobacillus sakei subsp. sakei 23K	57.88	98.867	0.572
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.208	90.085	0.569
recA	Bacillus subtilis subsp. subtilis str. 168	62.617	90.935	0.569
recA	Streptococcus pyogenes NZ131	62.229	91.501	0.569
recA	Helicobacter pylori strain NCTC11637	60.856	92.635	0.564
recA	Streptococcus mutans UA159	61.3	91.501	0.561
recA	Helicobacter pylori 26695	60.55	92.635	0.561
recA	Lactococcus lactis subsp. cremoris KW2	60.062	91.501	0.55
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.27	89.235	0.547