Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BPRO_RS23425 Genome accession   NC_007948
Coordinates   4972542..4973675 (-) Length   377 a.a.
NCBI ID   WP_011485555.1    Uniprot ID   Q122H4
Organism   Polaromonas sp. JS666     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4967542..4978675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPRO_RS23405 (Bpro_4681) sucD 4968327..4969220 (-) 894 WP_011485551.1 succinate--CoA ligase subunit alpha -
  BPRO_RS23410 (Bpro_4682) sucC 4969335..4970495 (-) 1161 WP_011485552.1 ADP-forming succinate--CoA ligase subunit beta -
  BPRO_RS23415 (Bpro_4683) argC 4970728..4971648 (+) 921 WP_041389041.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  BPRO_RS23420 (Bpro_4684) recX 4971944..4972417 (-) 474 WP_011485554.1 recombination regulator RecX -
  BPRO_RS23425 (Bpro_4685) recA 4972542..4973675 (-) 1134 WP_011485555.1 recombinase RecA Machinery gene
  BPRO_RS23430 (Bpro_4686) - 4973859..4974365 (+) 507 WP_011485556.1 MarR family winged helix-turn-helix transcriptional regulator -
  BPRO_RS23435 (Bpro_4687) - 4974627..4975298 (+) 672 WP_011485557.1 response regulator -
  BPRO_RS23440 (Bpro_4688) - 4975537..4976982 (+) 1446 WP_041390196.1 sensor histidine kinase -
  BPRO_RS23445 (Bpro_4689) - 4977012..4977869 (-) 858 WP_011485559.1 DMT family transporter -
  BPRO_RS23450 (Bpro_4690) - 4977859..4978428 (-) 570 WP_011485560.1 phosphonate degradation HD-domain oxygenase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40081.19 Da        Isoelectric Point: 5.6193

>NTDB_id=25687 BPRO_RS23425 WP_011485555.1 4972542..4973675(-) (recA) [Polaromonas sp. JS666]
MELTSKLNPAQNPVQTAALNTEKAKALQAALAQIEKQFGKGTIMKLGAGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVV
EIYGPESSGKTTLTLQVIAEMQKLGGTCAFVDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDSLTRSGAVDLIV
VDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTATIKKANCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVR
LDIRRIGSIKKGEEVIGNETRVKVVKNKVASPFKTAEFDILYGEGISRLGEVLDLGVAGHIVEKAGAWYAFNGEKIGQGR
DNSREFLKENPDLAIEIENKVRESLGVPLIAVAAETGEKSDKAAKVEKSEKPAKAAA

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=25687 BPRO_RS23425 WP_011485555.1 4972542..4973675(-) (recA) [Polaromonas sp. JS666]
ATGGAACTGACCAGCAAGCTGAATCCCGCCCAAAACCCTGTGCAAACCGCCGCCCTGAACACCGAAAAAGCCAAGGCCCT
GCAGGCTGCGCTGGCCCAGATTGAGAAGCAGTTTGGCAAGGGCACCATCATGAAGCTGGGTGCCGGCGAGGTGATCGAGG
ACATCCAGGTGGTCTCCACCGGCTCGCTGGGCCTGGACATTGCGCTGGGCGTTGGCGGCCTGCCGCGCGGCCGGGTGGTG
GAGATTTACGGCCCGGAGTCGTCGGGCAAAACCACGCTGACCCTGCAGGTGATTGCCGAAATGCAAAAACTGGGCGGCAC
CTGCGCCTTCGTCGACGCCGAGCACGCGCTGGACATCCAGTATGCGCAAAAGCTGGGCGTCAACCTGCAGGACCTGCTGA
TCAGCCAGCCCGACACCGGCGAGCAGGCGCTGGAAATCGTTGATTCGCTGACCCGCTCCGGCGCGGTGGACCTGATCGTG
GTCGACTCGGTGGCGGCGCTCACGCCCAAGGCCGAACTGGAAGGCGAAATGGGTGATTCGCTGCCCGGCCTGCAGGCCCG
CCTGATGAGCCAGGCGTTGCGCAAGCTCACCGCCACCATCAAGAAGGCCAACTGCATGGTGATCTTCATCAACCAGATCC
GCATGAAGATCGGTGTGATGTTTGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGC
CTGGACATCCGCCGCATCGGCTCCATCAAGAAGGGCGAGGAGGTGATCGGCAACGAAACCCGGGTCAAGGTGGTCAAGAA
CAAGGTGGCGTCGCCCTTCAAGACGGCGGAGTTTGACATCCTGTATGGCGAAGGCATCAGCCGCCTGGGCGAGGTCCTGG
ACCTGGGTGTGGCCGGCCACATCGTCGAAAAAGCCGGCGCCTGGTATGCCTTCAACGGCGAAAAAATCGGCCAGGGCCGC
GACAACTCGCGCGAATTCCTCAAGGAGAACCCTGATCTCGCGATTGAAATCGAAAACAAGGTGCGCGAGTCGCTGGGCGT
GCCGCTGATCGCCGTGGCCGCCGAGACGGGCGAAAAATCGGACAAGGCTGCCAAGGTCGAAAAGTCCGAAAAACCCGCCA
AAGCCGCAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q122H4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.826

89.92

0.727
  recA Acinetobacter baumannii D1279779

67.232

93.899

0.631
  recA Neisseria gonorrhoeae strain FA1090

71.299

87.798

0.626
  recA Neisseria gonorrhoeae MS11

71.299

87.798

0.626
  recA Neisseria gonorrhoeae MS11

71.299

87.798

0.626
  recA Vibrio cholerae strain A1552

68.314

91.247

0.623
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.314

91.247

0.623
  recA Glaesserella parasuis strain SC1401

67.723

92.042

0.623
  recA Pseudomonas stutzeri DSM 10701

71.56

86.737

0.621
  recA Acinetobacter baylyi ADP1

71.56

86.737

0.621
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.469

89.39

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.223

90.451

0.581
  recA Helicobacter pylori 26695

63.939

87.533

0.56
  recA Helicobacter pylori strain NCTC11637

63.636

87.533

0.557
  recA Bacillus subtilis subsp. subtilis str. 168

63.609

86.737

0.552
  recA Streptococcus mutans UA159

57.382

95.225

0.546
  recA Streptococcus mitis NCTC 12261

57.224

93.634

0.536
  recA Streptococcus mitis SK321

57.224

93.634

0.536
  recA Latilactobacillus sakei subsp. sakei 23K

61.35

86.472

0.531
  recA Streptococcus pyogenes NZ131

58.529

90.186

0.528
  recA Lactococcus lactis subsp. cremoris KW2

58.929

89.125

0.525
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

85.146

0.525
  recA Streptococcus pneumoniae Rx1

58.859

88.329

0.52
  recA Streptococcus pneumoniae D39

58.859

88.329

0.52
  recA Streptococcus pneumoniae R6

58.859

88.329

0.52
  recA Streptococcus pneumoniae TIGR4

58.859

88.329

0.52

Multiple sequence alignment