Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MFLA_RS02925 Genome accession   NC_007947
Coordinates   594941..595975 (-) Length   344 a.a.
NCBI ID   WP_011478937.1    Uniprot ID   Q1H3U7
Organism   Methylobacillus flagellatus KT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 589941..600975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFLA_RS02910 (Mfla_0567) - 590511..591737 (-) 1227 WP_011478934.1 aspartate kinase -
  MFLA_RS02915 (Mfla_0568) alaS 591804..594428 (-) 2625 WP_011478935.1 alanine--tRNA ligase -
  MFLA_RS02920 (Mfla_0569) recX 594493..594960 (-) 468 WP_011478936.1 recombination regulator RecX -
  MFLA_RS02925 (Mfla_0570) recA 594941..595975 (-) 1035 WP_011478937.1 recombinase RecA Machinery gene
  MFLA_RS02930 (Mfla_0571) - 596020..596523 (-) 504 WP_195742060.1 CinA family protein -
  MFLA_RS02935 (Mfla_0572) - 596499..596990 (-) 492 WP_011478939.1 phosphatidylglycerophosphatase A -
  MFLA_RS02940 (Mfla_0573) thiL 596974..597930 (-) 957 WP_011478940.1 thiamine-phosphate kinase -
  MFLA_RS02945 (Mfla_0574) mog 597933..598520 (-) 588 WP_011478941.1 molybdopterin adenylyltransferase -
  MFLA_RS02950 (Mfla_0575) - 598637..599392 (+) 756 WP_011478942.1 PDZ domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36971.17 Da        Isoelectric Point: 5.0545

>NTDB_id=25648 MFLA_RS02925 WP_011478937.1 594941..595975(-) (recA) [Methylobacillus flagellatus KT]
MDENRSKALAAALSQIEKQFGKGSIMRMGDTDVAADIQAVSTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLTLSVI
AQMQKLGGTAAFIDAEHALDPVYAQKLGVNVSDLLISQPDTGEQALEIADMLVRSGSVDVVVVDSVAALTPKAEIEGEMG
DSHMGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVTGS
ETRVKVVKNKVAPPFKQAEFDILYGEGISREGEIIELGVNLKLIEKAGAWYSYKGEKIGQGKDNAREFLREHPEIANEID
AKIREHSNLANAAMTTAPDEESDE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=25648 MFLA_RS02925 WP_011478937.1 594941..595975(-) (recA) [Methylobacillus flagellatus KT]
ATGGATGAAAACAGAAGCAAAGCGCTAGCCGCCGCCCTCTCGCAAATCGAGAAACAATTTGGCAAAGGCTCTATCATGCG
CATGGGCGACACCGATGTCGCTGCTGACATCCAGGCAGTTTCTACCGGCTCCCTGGGCCTGGACATCGCCCTGGGTATTG
GCGGCTTGCCGCGCGGCCGCATCGTCGAGATTTACGGCCCGGAATCCTCCGGCAAGACCACGCTGACATTGTCTGTGATC
GCGCAGATGCAAAAGCTGGGCGGCACGGCAGCATTCATCGACGCAGAACACGCGCTCGACCCGGTCTACGCGCAGAAGCT
CGGTGTCAATGTTTCCGATCTGCTCATCTCCCAGCCCGACACCGGCGAACAGGCGCTCGAGATCGCCGACATGCTGGTGC
GCTCCGGCTCGGTAGATGTCGTGGTGGTCGACTCCGTCGCTGCGCTGACGCCCAAGGCCGAAATCGAAGGCGAAATGGGC
GACTCGCACATGGGCCTGCAGGCCCGCCTGATGTCGCAGGCACTGCGCAAGCTCACCGCCAACATCAAGCGCACCAACAC
CTTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCCGAGACCACCACCGGCGGCAATG
CACTCAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCACCGGCGCGATCAAGAAGGGGGACGAGGTCACGGGATCA
GAAACCCGGGTCAAGGTAGTGAAGAACAAAGTGGCCCCTCCGTTCAAGCAAGCGGAATTCGACATCCTCTATGGCGAAGG
TATCTCGCGCGAGGGCGAAATCATCGAACTCGGCGTCAACCTTAAATTGATCGAGAAGGCCGGTGCCTGGTACAGCTACA
AGGGCGAGAAGATCGGCCAGGGCAAGGACAACGCGCGCGAGTTCCTCAGGGAGCACCCGGAAATCGCCAATGAGATCGAC
GCCAAGATTCGCGAGCATTCCAATCTGGCCAACGCCGCGATGACGACGGCACCGGATGAAGAAAGCGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1H3U7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.54

99.128

0.759
  recA Ralstonia pseudosolanacearum GMI1000

78.116

95.64

0.747
  recA Glaesserella parasuis strain SC1401

73.043

100

0.733
  recA Acinetobacter baylyi ADP1

72.674

100

0.727
  recA Acinetobacter baumannii D1279779

71.884

100

0.721
  recA Neisseria gonorrhoeae MS11

75.926

94.186

0.715
  recA Neisseria gonorrhoeae MS11

75.926

94.186

0.715
  recA Neisseria gonorrhoeae strain FA1090

75.926

94.186

0.715
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.692

94.477

0.715
  recA Vibrio cholerae strain A1552

75.692

94.477

0.715
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

95.64

0.648
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.261

95.64

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.188

100

0.634
  recA Helicobacter pylori strain NCTC11637

62.609

100

0.628
  recA Streptococcus pneumoniae D39

63.158

99.419

0.628
  recA Streptococcus pneumoniae R6

63.158

99.419

0.628
  recA Streptococcus pneumoniae TIGR4

63.158

99.419

0.628
  recA Streptococcus pneumoniae Rx1

63.158

99.419

0.628
  recA Streptococcus mutans UA159

61.143

100

0.622
  recA Helicobacter pylori 26695

62.029

100

0.622
  recA Streptococcus mitis NCTC 12261

64.815

94.186

0.61
  recA Latilactobacillus sakei subsp. sakei 23K

61.111

99.419

0.608
  recA Streptococcus mitis SK321

64.506

94.186

0.608
  recA Streptococcus pyogenes NZ131

64.11

94.767

0.608
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.733

93.605

0.587
  recA Lactococcus lactis subsp. cremoris KW2

61.398

95.64

0.587

Multiple sequence alignment