Detailed information NTG0025569

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: SDE_RS06750
• Genome accession: NC_007912
• Coordinates: 1652108..1653154 (+)
• Length: 348 a.a.
• NCBI ID: WP_011467770.1
• Uniprot ID: Q21L79
• Organism: Saccharophagus degradans 2-40
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1647108..1658154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDE_RS06735 (Sde_1285)	-	1648241..1650715 (+)	2475	WP_011467767.1	glycoside hydrolase family 2 protein	-
SDE_RS06740 (Sde_1286)	-	1650835..1651275 (-)	441	WP_011467768.1	DUF4124 domain-containing protein	-
SDE_RS06745 (Sde_1287)	-	1651452..1651940 (+)	489	WP_083762957.1	CinA family protein	-
SDE_RS06750 (Sde_1288)	recA	1652108..1653154 (+)	1047	WP_011467770.1	recombinase RecA	Machinery gene
SDE_RS06755 (Sde_1289)	-	1653197..1653643 (+)	447	WP_011467771.1	regulatory protein RecX	-
SDE_RS06760 (Sde_1290)	-	1653717..1654052 (-)	336	WP_011467772.1	hypothetical protein	-
SDE_RS06765 (Sde_1291)	-	1654333..1656468 (+)	2136	WP_011467773.1	type I secretion system permease/ATPase	-
SDE_RS06770 (Sde_1292)	-	1656458..1657843 (+)	1386	WP_011467774.1	HlyD family type I secretion periplasmic adaptor subunit	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 37343.68 Da
• Isoelectric Point: 5.0617

>NTDB_id=25569 SDE_RS06750 WP_011467770.1 1652108..1653154(+) (recA) [Saccharophagus degradans 2-40]
MDASKSKALEAALSQIDRQFGKGTVMRLGDKGREKMPAISTGSLGLDVALGIGGLPKGRIVEIYGPESSGKTTLTLQVIA
EAQRQGGTCAFVDAEHALDPVYAEKLGVNVDDLIISQPDNGEQALEVADMLVRSGAVDVLVVDSVAALTPKAEIEGDMGD
HHVGLQARLMSQALRKITGNIKNANCLAIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVVGSD
TRVKVVKNKVAPPFKQAEFQILYGQGINRLGEIVDFGVKLGLIDKAGAWYSYNGDKIGQGKANAMQYLRDNKEVAEFLEQ
KIKAELLGDIKPVAKEGAEVEEESAEQE

Nucleotide

• Length: 1047 bp

>NTDB_id=25569 SDE_RS06750 WP_011467770.1 1652108..1653154(+) (recA) [Saccharophagus degradans 2-40]
ATGGATGCCAGTAAATCAAAAGCGTTAGAAGCTGCACTTTCTCAAATTGATCGCCAGTTCGGTAAGGGCACGGTTATGCG
CCTTGGCGATAAAGGCAGAGAAAAAATGCCTGCTATTTCAACCGGTTCACTCGGTTTAGATGTGGCCTTAGGTATAGGTG
GCTTGCCCAAAGGACGTATTGTTGAGATTTACGGCCCTGAATCTTCAGGTAAAACCACGCTAACCCTTCAAGTTATTGCA
GAAGCGCAGCGCCAAGGTGGCACTTGTGCTTTCGTTGATGCCGAGCATGCACTAGACCCTGTATACGCCGAAAAGCTTGG
TGTAAATGTAGACGACCTAATTATTTCTCAGCCAGATAACGGTGAACAGGCCTTAGAAGTTGCCGATATGTTGGTTCGTT
CTGGCGCTGTAGATGTGCTTGTTGTCGACTCCGTGGCGGCGCTTACTCCCAAGGCCGAAATCGAAGGCGATATGGGCGAC
CACCACGTTGGTTTGCAAGCGCGATTAATGTCGCAAGCACTGCGAAAAATTACGGGCAACATTAAAAACGCTAACTGTTT
AGCAATTTTTATTAACCAAATTCGTATGAAGATTGGTGTGATGTTCGGCAACCCAGAAACCACTACCGGTGGTAACGCGC
TGAAGTTCTACTCTTCGGTTCGTTTAGATATCCGTCGCATTGGCTCAGTTAAAGAGGGCGATGAGGTTGTTGGCTCGGAT
ACGCGCGTTAAAGTTGTTAAAAATAAAGTTGCGCCACCCTTTAAGCAAGCCGAGTTTCAAATTTTGTATGGTCAGGGCAT
AAACCGCTTGGGCGAGATTGTAGACTTTGGTGTTAAGCTTGGTTTAATTGATAAAGCTGGTGCTTGGTATAGCTATAACG
GCGATAAAATTGGCCAGGGTAAAGCAAATGCTATGCAATACCTTCGCGATAACAAAGAAGTTGCCGAGTTCTTAGAGCAA
AAAATAAAGGCGGAATTACTGGGCGATATTAAGCCTGTAGCTAAAGAAGGCGCTGAAGTTGAAGAAGAGAGCGCAGAGCA
GGAGTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-268)

3D structure

• AlphaFold DB: Q21L79

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Pseudomonas stutzeri DSM 10701	79.511	93.966	0.747
recA	Acinetobacter baylyi ADP1	71.429	98.563	0.704
recA	Acinetobacter baumannii D1279779	74.618	93.966	0.701
recA	Glaesserella parasuis strain SC1401	68.286	100	0.687
recA	Vibrio cholerae strain A1552	72.477	93.966	0.681
recA	Vibrio cholerae O1 biovar El Tor strain E7946	72.477	93.966	0.681
recA	Ralstonia pseudosolanacearum GMI1000	71.472	93.678	0.67
recA	Neisseria gonorrhoeae MS11	69.846	93.391	0.652
recA	Neisseria gonorrhoeae MS11	69.846	93.391	0.652
recA	Neisseria gonorrhoeae strain FA1090	69.846	93.391	0.652
recA	Helicobacter pylori 26695	62.391	98.563	0.615
recA	Helicobacter pylori strain NCTC11637	62.391	98.563	0.615
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	64.329	94.253	0.606
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.22	93.966	0.603
recA	Bacillus subtilis subsp. subtilis str. 168	62.617	92.241	0.578
recA	Latilactobacillus sakei subsp. sakei 23K	61.875	91.954	0.569
recA	Streptococcus mutans UA159	60.615	93.391	0.566
recA	Streptococcus pneumoniae Rx1	55.84	100	0.563
recA	Streptococcus pneumoniae D39	55.84	100	0.563
recA	Streptococcus pneumoniae R6	55.84	100	0.563
recA	Streptococcus pneumoniae TIGR4	55.84	100	0.563
recA	Streptococcus pyogenes NZ131	59.202	93.678	0.555
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	58.841	94.253	0.555
recA	Streptococcus mitis SK321	58.841	94.253	0.555
recA	Streptococcus mitis NCTC 12261	58.537	94.253	0.552
recA	Lactococcus lactis subsp. cremoris KW2	56.442	93.678	0.529