Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   COO91_RS18000 Genome accession   NZ_CP024785
Coordinates   3865392..3866471 (+) Length   359 a.a.
NCBI ID   WP_100899603.1    Uniprot ID   A0A2K8SS23
Organism   Nostoc flagelliforme CCNUN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3860392..3871471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COO91_RS17965 - 3860645..3860854 (+) 210 WP_404824229.1 helix-turn-helix domain-containing protein -
  COO91_RS17970 (COO91_04169) - 3861033..3862043 (+) 1011 WP_100899597.1 chemotaxis protein CheB -
  COO91_RS17975 (COO91_04170) xseB 3862288..3862515 (-) 228 WP_100899598.1 exodeoxyribonuclease VII small subunit -
  COO91_RS17980 (COO91_04171) xseA 3862515..3863777 (-) 1263 WP_100899599.1 exodeoxyribonuclease VII large subunit -
  COO91_RS17985 (COO91_04172) - 3864187..3864417 (+) 231 WP_100899600.1 hypothetical protein -
  COO91_RS17990 (COO91_04173) - 3864414..3864629 (+) 216 WP_100899601.1 hypothetical protein -
  COO91_RS17995 - 3864613..3864912 (-) 300 WP_100899602.1 hypothetical protein -
  COO91_RS18000 (COO91_04176) recA 3865392..3866471 (+) 1080 WP_100899603.1 recombinase RecA Machinery gene
  COO91_RS18005 (COO91_04177) - 3866892..3867614 (-) 723 WP_208766793.1 FHA domain-containing protein -
  COO91_RS18010 (COO91_04178) - 3868594..3870195 (-) 1602 WP_100899605.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38486.85 Da        Isoelectric Point: 4.9023

>NTDB_id=255419 COO91_RS18000 WP_100899603.1 3865392..3866471(+) (recA) [Nostoc flagelliforme CCNUN1]
MAINTDTSGKQKALTMVLNQIERSFGKGAIMRLGDATRMRVETISSGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HALAEVQRNGGVAAFVDAEHALDPTYAAALGVDIDNLLISQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGISTLGCLVDLAEETGIIVRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAD
EIKKLVREKLDKGAVVSANSVAKASEEDEEEEVDLEPEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=255419 COO91_RS18000 WP_100899603.1 3865392..3866471(+) (recA) [Nostoc flagelliforme CCNUN1]
ATGGCTATCAACACGGATACTTCTGGCAAGCAAAAAGCGCTAACTATGGTGCTTAACCAGATTGAGCGCAGCTTTGGTAA
AGGAGCAATCATGCGCCTGGGCGATGCCACCCGGATGCGGGTGGAGACTATTTCCAGTGGGGCGCTCACCCTAGATTTAG
CATTGGGTGGTGGTTTACCCAAGGGGCGGGTAATTGAAATCTATGGCCCGGAAAGTTCCGGGAAGACTACAGTAGCGCTA
CATGCGCTCGCCGAAGTGCAAAGAAATGGCGGTGTTGCAGCCTTTGTTGATGCAGAACACGCCCTCGATCCTACTTATGC
TGCGGCATTGGGTGTAGATATTGACAATTTGCTGATTTCCCAACCTGATACAGGCGAATCAGCTTTGGAAATTGTCGATC
AGCTTGTTCGCTCTGCTGCGGTTGATATTGTTGTCATTGACTCAGTAGCAGCACTAGTTCCTCGTGCTGAAATTGAAGGC
GATATGGGTGACGCCCACGTTGGTCTGCAAGCGCGATTAATGAGCCAAGCCCTACGTAAAATTACGGGCAATATTGGTAA
ATCTGGTTGTACAGTCATTTTCATCAACCAGTTGCGGCAAAAAATCGGTGTTACCTACGGTAGCCCAGAAACCACTACTG
GCGGTAATGCATTGAAATTTTACGCTTCGGTGCGCTTGGATATTCGCCGAATTCAAACCTTGAAAAAAGGTACTGATGAA
TTTGGTAATCGCGTTAAAGTCAAAGTTGCTAAAAATAAAGTAGCGCCGCCTTTCAGAATCGCTGAATTCGACATTATTTT
TGGTAAAGGTATTTCTACCTTGGGTTGTCTTGTTGACCTAGCAGAAGAAACTGGCATTATTGTCCGCAAAGGAGCTTGGT
ATAGTTACAATGGCGATAATATCTCGCAAGGACGAGACAACGCTATTAAGTATCTAGAGGAAAAGCCCGAATTTGCTGAC
GAAATTAAGAAACTGGTGCGTGAAAAGCTAGACAAAGGTGCTGTTGTTTCAGCTAACTCTGTAGCTAAAGCCAGTGAAGA
GGATGAAGAGGAAGAAGTCGATTTAGAGCCAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8SS23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

63.689

96.657

0.616
  recA Acinetobacter baumannii D1279779

62.931

96.936

0.61
  recA Pseudomonas stutzeri DSM 10701

64.118

94.708

0.607
  recA Neisseria gonorrhoeae MS11

61.756

98.329

0.607
  recA Neisseria gonorrhoeae strain FA1090

61.756

98.329

0.607
  recA Neisseria gonorrhoeae MS11

61.756

98.329

0.607
  recA Ralstonia pseudosolanacearum GMI1000

63.746

92.201

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

62.952

92.479

0.582
  recA Streptococcus pneumoniae Rx1

58.592

98.886

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

58.592

98.886

0.579
  recA Streptococcus pneumoniae TIGR4

58.592

98.886

0.579
  recA Streptococcus pneumoniae R6

58.592

98.886

0.579
  recA Streptococcus pneumoniae D39

58.592

98.886

0.579
  recA Glaesserella parasuis strain SC1401

59.77

96.936

0.579
  recA Helicobacter pylori 26695

62.048

92.479

0.574
  recA Helicobacter pylori strain NCTC11637

62.048

92.479

0.574
  recA Streptococcus pyogenes NZ131

58.074

98.329

0.571
  recA Streptococcus mutans UA159

59.078

96.657

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.42

96.1

0.571
  recA Streptococcus mitis NCTC 12261

57.746

98.886

0.571
  recA Streptococcus mitis SK321

57.022

99.164

0.565
  recA Vibrio cholerae strain A1552

62.422

89.694

0.56
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

89.694

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

91.365

0.546
  recA Lactococcus lactis subsp. cremoris KW2

60.062

89.972

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.704

92.201

0.532

Multiple sequence alignment