Detailed information NTG0255407

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: CTV95_RS20535
• Genome accession: NZ_CP024780
• Coordinates: 4524537..4525610 (+)
• Length: 357 a.a.
• NCBI ID: WP_100018318.1
• Uniprot ID: -
• Organism: Pectobacterium brasiliense strain BZA12
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	4513636..4523922	4524537..4525610	flank	615

Gene organization within MGE regions

Location: 4513636..4525610

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CTV95_RS20480 (CTV95_20480)	-	4513636..4514121 (+)	486	WP_100018314.1	hypothetical protein	-
CTV95_RS22840	-	4514391..4514522 (-)	132	WP_257982121.1	hypothetical protein	-
CTV95_RS20485 (CTV95_20485)	pvcA	4514740..4515699 (+)	960	WP_373367553.1	L-tyrosine isonitrile synthase	-
CTV95_RS22600	-	4515779..4515928 (+)	150	WP_180775315.1	hypothetical protein	-
CTV95_RS20490 (CTV95_20490)	-	4516035..4516451 (+)	417	WP_039504902.1	bacteriocin immunity protein	-
CTV95_RS20495 (CTV95_20495)	grxB	4516548..4517183 (-)	636	WP_039504900.1	glutaredoxin 2	-
CTV95_RS20500 (CTV95_20500)	-	4517399..4518280 (+)	882	WP_039504898.1	LysR family transcriptional regulator	-
CTV95_RS20505 (CTV95_20505)	-	4518396..4519616 (+)	1221	WP_100018315.1	MFS transporter	-
CTV95_RS20510 (CTV95_20510)	-	4519861..4521459 (-)	1599	WP_100018316.1	sensor domain-containing diguanylate cyclase	-
CTV95_RS20515 (CTV95_20515)	-	4521639..4522313 (-)	675	WP_010307203.1	MarC family NAAT transporter	-
CTV95_RS20520 (CTV95_20520)	-	4522396..4522884 (-)	489	WP_100018317.1	SRPBCC family protein	-
CTV95_RS20525 (CTV95_20525)	-	4523366..4523701 (+)	336	WP_010285350.1	hypothetical protein	-
CTV95_RS20530 (CTV95_20530)	pncC	4523935..4524429 (+)	495	WP_039523519.1	nicotinamide-nucleotide amidase	-
CTV95_RS20535 (CTV95_20535)	recA	4524537..4525610 (+)	1074	WP_100018318.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 357 a.a.
• Molecular weight: 38288.79 Da
• Isoelectric Point: 5.0716

>NTDB_id=255407 CTV95_RS20535 WP_100018318.1 4524537..4525610(+) (recA) [Pectobacterium brasiliense strain BZA12]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPTIAAEL
DKKLREMLLHKGNELAPATVGNSHDEDEFAGEGNEEF

Nucleotide

• Length: 1074 bp

>NTDB_id=255407 CTV95_RS20535 WP_100018318.1 4524537..4525610(+) (recA) [Pectobacterium brasiliense strain BZA12]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGTCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACCATTTCTACAGGCTCTTTGTCCTTGGATATCGCTTTGGGCG
CCGGTGGTTTACCGATGGGGCGTATCGTTGAGATTTATGGCCCAGAATCTTCCGGTAAAACAACGCTGACCTTACAGGTT
ATTGCTGCCGCTCAACGCGAAGGCAAAACGTGTGCGTTTATCGATGCTGAGCATGCGCTGGACCCGATTTATGCGAAAAA
GCTTGGTGTAGATATCGATAACCTGCTGTGTTCTCAGCCGGATACCGGCGAGCAAGCGTTGGAGATCTGTGATGCATTAA
CGCGCTCTGGCGCTGTTGACGTTATCATCGTCGACTCCGTTGCGGCACTGACGCCGAAAGCAGAAATTGAAGGTGAAATC
GGCGACTCCCACATGGGGCTGGCTGCACGTATGATGAGCCAGGCTATGCGTAAACTGGCGGGTAACCTGAAGCAAGCCAA
TACGCTGCTGATCTTCATTAACCAGATTCGTATGAAAATCGGTGTGATGTTCGGTAACCCTGAAACCACTACCGGTGGTA
ACGCTCTGAAATTTTATGCTTCTGTTCGCCTGGATATTCGTCGTACTGGTGCAATCAAGGAAGGCGAAGAGGTTGTCGGC
AGCGAAACCCGTGTGAAAGTCGTGAAGAATAAAGTGGCAGCGCCGTTCAAACAGGCTGAATTCCAAATTCTGTACGGCGA
AGGCATCAATATCCACGGTGAGCTGGTCGATCTGGGTGTGAAACACAAGCTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ATAACGGCGACAAGATCGGTCAGGGTAAAGCAAATGCCTGTAATTTCCTGAAAGAGAACCCGACTATTGCTGCGGAATTG
GATAAGAAATTGCGTGAAATGCTGCTGCATAAAGGCAATGAACTGGCACCTGCCACCGTTGGAAATAGCCATGACGAAGA
TGAATTCGCTGGTGAAGGCAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	83.099	99.44	0.826
recA	Vibrio cholerae O1 biovar El Tor strain E7946	83.099	99.44	0.826
recA	Pseudomonas stutzeri DSM 10701	76.147	91.597	0.697
recA	Acinetobacter baylyi ADP1	70.52	96.919	0.683
recA	Glaesserella parasuis strain SC1401	69.231	98.319	0.681
recA	Acinetobacter baumannii D1279779	72.727	92.437	0.672
recA	Neisseria gonorrhoeae MS11	69.632	91.317	0.636
recA	Neisseria gonorrhoeae MS11	69.632	91.317	0.636
recA	Neisseria gonorrhoeae strain FA1090	69.632	91.317	0.636
recA	Ralstonia pseudosolanacearum GMI1000	70.418	87.115	0.613
recA	Streptococcus pneumoniae Rx1	60	99.44	0.597
recA	Streptococcus pneumoniae R6	60	99.44	0.597
recA	Streptococcus pneumoniae D39	60	99.44	0.597
recA	Streptococcus pneumoniae TIGR4	60	99.44	0.597
recA	Streptococcus mitis NCTC 12261	61.493	93.838	0.577
recA	Helicobacter pylori strain NCTC11637	62.691	91.597	0.574
recA	Helicobacter pylori 26695	62.385	91.597	0.571
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	62.08	91.597	0.569
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.299	93.838	0.566
recA	Streptococcus mitis SK321	62.539	90.476	0.566
recA	Streptococcus pyogenes NZ131	62.154	91.036	0.566
recA	Streptococcus mutans UA159	62.154	91.036	0.566
recA	Lactococcus lactis subsp. cremoris KW2	62.229	90.476	0.563
recA	Bacillus subtilis subsp. subtilis str. 168	62.305	89.916	0.56
recA	Latilactobacillus sakei subsp. sakei 23K	61.231	91.036	0.557
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	58.589	91.317	0.535