Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CT113_RS04415 Genome accession   NZ_CP024635
Coordinates   811869..813002 (-) Length   377 a.a.
NCBI ID   WP_024525501.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain BDGP6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 806869..818002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT113_RS04405 (CT113_04405) - 808821..809615 (-) 795 WP_024525499.1 TIGR00282 family metallophosphoesterase -
  CT113_RS04410 (CT113_04410) rny 809747..811306 (-) 1560 WP_024525500.1 ribonuclease Y -
  CT113_RS14345 - 811634..811786 (+) 153 WP_021742880.1 hypothetical protein -
  CT113_RS04415 (CT113_04415) recA 811869..813002 (-) 1134 WP_024525501.1 recombinase RecA Machinery gene
  CT113_RS04420 (CT113_04420) cinA 813096..814346 (-) 1251 WP_024525502.1 competence/damage-inducible protein A Machinery gene
  CT113_RS04425 (CT113_04425) pgsA 814402..814989 (-) 588 WP_011668109.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CT113_RS04430 (CT113_04430) - 815051..815956 (-) 906 WP_024525503.1 helix-turn-helix domain-containing protein -
  CT113_RS04435 (CT113_04435) yfmH 816070..817359 (-) 1290 WP_021742877.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40334.75 Da        Isoelectric Point: 5.3901

>NTDB_id=254638 CT113_RS04415 WP_024525501.1 811869..813002(-) (recA) [Levilactobacillus brevis strain BDGP6]
MADERQAALDKALKKIEKDFGKGSIMRLGDNSNLEVETVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQIKDGTDVIGNR
TRIKVVKNKVAPPFKRAEVDIMYGQGISQTGELLDMAVEKDIIDKSGSWYSYGEDRIGQGRENAKQYLADHPDMMAEVNQ
RVRAAYGVGDEEAAATKATETKTDAPKDKDKGKTKAKDKPADVTPGQIELAPDKSAK

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=254638 CT113_RS04415 WP_024525501.1 811869..813002(-) (recA) [Levilactobacillus brevis strain BDGP6]
ATGGCTGACGAACGACAAGCGGCGCTGGATAAAGCGCTGAAGAAGATTGAAAAAGACTTTGGTAAAGGCTCGATTATGCG
ATTAGGGGACAATAGTAACCTCGAAGTTGAGACCGTACCATCAGGCTCGTTAGCACTTGACGTTGCCTTGGGTGTCGGCG
GTTACCCTCGCGGACGGATTGTAGAAATTTATGGTCCAGAATCTTCTGGGAAGACGACCGTTGCTCTGCACGCAGTTGCC
GAGGTCCAAAAGCGTGGTGGAACAGCCGCCTATATTGATGCTGAAAATGCGTTGGATCCAGCCTATGCAACGGCATTAGG
GGTTAACATTGATGATTTATTGCTGTCGCAGCCAGATACTGGGGAACAAGGCTTGCAAATCGCTGATGCCTTGATTTCCA
GTGGTGCGATTGACATTGTCGTGGTTGATTCCGTGGCAGCCTTAGTGCCACGTGCTGAAATTGAAGGCGAAATGGGTGAT
GCTCACGTGGGTCTGCAAGCCCGATTGATGTCACAAGCCTTACGGAAGCTATCTGGGACCATCAATAAAACGAAGACAAT
CGCGTTATTTATCAATCAGATTCGGGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAGACCACACCAGGTGGCCGGGCAC
TGAAATTCTATGCGACAGTGCGGTTAGAGGTACGACGGGCCGAACAGATTAAAGATGGCACGGATGTTATCGGTAACCGA
ACGCGAATCAAGGTCGTTAAGAACAAGGTTGCGCCGCCATTTAAACGGGCCGAAGTTGATATCATGTACGGGCAAGGAAT
CTCACAAACCGGTGAATTGCTCGACATGGCGGTTGAGAAAGATATCATTGATAAAAGCGGTTCTTGGTATTCTTATGGTG
AAGACCGAATTGGTCAAGGCCGAGAGAATGCTAAACAGTACTTGGCAGATCATCCAGATATGATGGCTGAAGTTAATCAA
CGTGTCCGGGCTGCTTACGGTGTTGGCGATGAAGAAGCCGCAGCGACTAAAGCAACTGAGACGAAGACTGATGCGCCTAA
AGACAAGGATAAAGGGAAGACAAAGGCTAAAGATAAACCGGCCGATGTTACTCCCGGTCAGATTGAGTTAGCACCAGACA
AATCAGCTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.195

92.308

0.777
  recA Bacillus subtilis subsp. subtilis str. 168

75.305

87.003

0.655
  recA Streptococcus pyogenes NZ131

68.245

95.225

0.65
  recA Streptococcus pneumoniae R6

69.231

93.103

0.645
  recA Streptococcus pneumoniae TIGR4

69.231

93.103

0.645
  recA Streptococcus pneumoniae Rx1

69.231

93.103

0.645
  recA Streptococcus pneumoniae D39

69.231

93.103

0.645
  recA Streptococcus mitis SK321

70.845

90.981

0.645
  recA Streptococcus mitis NCTC 12261

70.468

90.716

0.639
  recA Streptococcus mutans UA159

67.227

94.695

0.637
  recA Lactococcus lactis subsp. cremoris KW2

70.238

89.125

0.626
  recA Neisseria gonorrhoeae MS11

60.345

92.308

0.557
  recA Neisseria gonorrhoeae MS11

60.345

92.308

0.557
  recA Neisseria gonorrhoeae strain FA1090

60.345

92.308

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.727

87.533

0.549
  recA Ralstonia pseudosolanacearum GMI1000

62.614

87.268

0.546
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

86.737

0.533
  recA Vibrio cholerae strain A1552

62.229

85.676

0.533
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

85.676

0.533
  recA Pseudomonas stutzeri DSM 10701

57.681

91.512

0.528
  recA Acinetobacter baylyi ADP1

61.3

85.676

0.525
  recA Acinetobacter baumannii D1279779

60.372

85.676

0.517
  recA Glaesserella parasuis strain SC1401

60.436

85.146

0.515
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.055

87.268

0.507
  recA Helicobacter pylori 26695

56.667

87.533

0.496
  recA Helicobacter pylori strain NCTC11637

56.667

87.533

0.496

Multiple sequence alignment