Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CS557_RS09580 Genome accession   NZ_CP024632
Coordinates   2006970..2008019 (+) Length   349 a.a.
NCBI ID   WP_099948831.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2001970..2013019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS09560 (CS557_09565) - 2004040..2004771 (-) 732 WP_004912000.1 histidine phosphatase family protein -
  CS557_RS09565 (CS557_09570) - 2004825..2005682 (-) 858 WP_004962737.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CS557_RS09570 (CS557_09575) - 2005694..2006398 (+) 705 WP_099948830.1 HAD-IA family hydrolase -
  CS557_RS09575 (CS557_09580) - 2006382..2006810 (+) 429 WP_004912009.1 RNA-binding S4 domain-containing protein -
  CS557_RS09580 (CS557_09585) recA 2006970..2008019 (+) 1050 WP_099948831.1 recombinase RecA Machinery gene
  CS557_RS09585 (CS557_09590) - 2008066..2008548 (+) 483 WP_099948832.1 regulatory protein RecX -
  CS557_RS09595 (CS557_09600) - 2008981..2009844 (+) 864 WP_099948833.1 YbgF trimerization domain-containing protein -
  CS557_RS09600 (CS557_09605) - 2009904..2011775 (-) 1872 WP_099948834.1 SurA N-terminal domain-containing protein -
  CS557_RS09605 (CS557_09610) - 2011915..2012187 (-) 273 WP_004878739.1 HU family DNA-binding protein -
  CS557_RS09610 (CS557_09615) - 2012355..2012810 (-) 456 WP_004912022.1 phasin family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37850.26 Da        Isoelectric Point: 5.0312

>NTDB_id=254593 CS557_RS09580 WP_099948831.1 2006970..2008019(+) (recA) [Acinetobacter junii strain lzh-X15]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFREAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENSKIAAEIEK
VVREQLLTKNNPEAAAPTEDVEEPDFLES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=254593 CS557_RS09580 WP_099948831.1 2006970..2008019(+) (recA) [Acinetobacter junii strain lzh-X15]
ATGGATGATAATAAAAGTAAAGCGTTACAAGCTGCGTTAAGCCAGATTGAAAAACAATTTGGCAAAAACACTGTGATGCG
CTTAGGTGACAATACTGTACAAGCAGTTGAAGCTGTATCTACAGGGTCATTAACACTAGATATCGCTTTAGGTATTGGTG
GATTACCAAAAGGTCGTATTATTGAGATTTATGGCCCTGAATCATCTGGTAAAACAACAATGACATTGCAAGCAATTGCT
CAATGTCAAAAAAATGGTGGTACTTGTGCATTCATCGATGCTGAACATGCGCTTGATCCACAATATGCACGTAAATTAGG
CGTTGATATTGACAATCTACTAGTCTCTCAGCCTGACAATGGTGAACAAGCGCTTGAAATCGCAGATATGCTCGTTCGTT
CAGGTGCAATTGATTTAATCGTTGTTGACTCAGTTGCAGCATTAACACCAAAAGCTGAAATTGAAGGCGAAATGGGTGAC
TCTCATATGGGCTTACAAGCTCGTTTGATGAGCCAAGCATTGCGTAAAATCACTGGTAACGCAAAACGCTCTAACTGTAT
GGTGATCTTCATCAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAGTCCAGAAACAACCACTGGTGGTAATGCAC
TTAAATTCTATGCGTCAGTGCGCTTAGATATCCGTCGTATTGGACAAGTTAAGGAAGGCGATGAAATCGTTGGTTCTGAA
ACTAAAGTCAAAGTTGTAAAAAACAAAATGGCTCCTCCTTTCCGCGAAGCAGTATTCCAAATCATGTACGGTAAAGGAAC
TAATCAACTAGGTGAATTAGTTGACCTCGCCGTACAACAAGATATTGTTCAAAAAGCGGGTGCATGGTACTCATACCAAG
GCAACAAAATCGGACAAGGTAAAAACAACGTAATTCGTTATTTTGAAGAGAATTCGAAAATCGCTGCTGAAATTGAGAAG
GTTGTTCGCGAGCAATTACTCACTAAAAACAATCCTGAAGCAGCAGCCCCTACAGAAGATGTAGAAGAACCAGATTTTTT
AGAAAGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

93.66

99.427

0.931
  recA Acinetobacter baylyi ADP1

92.837

100

0.928
  recA Pseudomonas stutzeri DSM 10701

72.911

99.427

0.725
  recA Vibrio cholerae strain A1552

71.098

99.14

0.705
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.098

99.14

0.705
  recA Glaesserella parasuis strain SC1401

69.527

96.848

0.673
  recA Ralstonia pseudosolanacearum GMI1000

72.347

89.112

0.645
  recA Neisseria gonorrhoeae MS11

68.519

92.837

0.636
  recA Neisseria gonorrhoeae MS11

68.519

92.837

0.636
  recA Neisseria gonorrhoeae strain FA1090

68.519

92.837

0.636
  recA Helicobacter pylori strain NCTC11637

62.791

98.567

0.619
  recA Helicobacter pylori 26695

62.5

98.567

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

93.696

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

95.702

0.605
  recA Streptococcus mitis SK321

60.882

97.421

0.593
  recA Streptococcus mitis NCTC 12261

60.588

97.421

0.59
  recA Streptococcus pneumoniae TIGR4

62.883

93.41

0.587
  recA Streptococcus pneumoniae R6

62.883

93.41

0.587
  recA Streptococcus pneumoniae Rx1

62.883

93.41

0.587
  recA Streptococcus pneumoniae D39

62.883

93.41

0.587
  recA Streptococcus mutans UA159

58.96

99.14

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

62.195

93.983

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.654

92.837

0.582
  recA Streptococcus pyogenes NZ131

62.154

93.123

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

56.812

98.854

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.133

92.55

0.547

Multiple sequence alignment